Burkholderia ambifaria AMMD: Bamb_3243
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Entry
Bamb_3243 CDS
T00398
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam03030
DNA replication
bam03410
Base excision repair
bam03420
Nucleotide excision repair
bam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bamb_3243
03410 Base excision repair
Bamb_3243
03420 Nucleotide excision repair
Bamb_3243
03440 Homologous recombination
Bamb_3243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bam03032
]
Bamb_3243
03400 DNA repair and recombination proteins [BR:
bam03400
]
Bamb_3243
Enzymes [BR:
bam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bamb_3243
DNA replication proteins [BR:
bam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Bamb_3243
DNA repair and recombination proteins [BR:
bam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Bamb_3243
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bamb_3243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
ABI88798
UniProt:
Q0BAM5
LinkDB
All DBs
Position
2:21947..24700
Genome browser
AA seq
917 aa
AA seq
DB search
MPEERNLEGKTLLLVDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEY
SACVFDAKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDV
IGTLAREAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERII
DYLALIGDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLP
LGRTLVTVETACDLAPHLESIEASLKTDGEARHLLRDIFARYGFKTWLREVESAPAEGGG
ADAPEGDPAPVIAADIVREYDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVG
LSFSIEPGKAAYLPVAHRGPDLPEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLAN
YGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVAL
EQAAAYAAEDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDAL
LQAQSTEIATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDE
EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLAS
NDPNLQNIPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGE
DIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRY
FTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGT
AADLIKLSMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVAKLK
VPLVAEVGAGANWEEAH
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaagaacgaaatctggaaggtaagaccctgctattggttgacggttcgagctat
ctgtatcgggcttaccatgcgatgcctgatctgcgtggccctggcggggagccgaccgga
gcgctctacggaatcatcaacatgctgcgccgtatgcgcaaggaagtcagtgcagagtat
agcgcttgcgtgttcgatgcaaagggcaagacgttccgcgacgacctttatgccgactat
aaggcaaaccgtccgtcgatgccgcctgatctcgcgttgcaggtcgagccgatccacggc
gcggtgcgcgcgctcggctggccgctgctgatggtcgagggtgtcgaagccgacgacgtg
atcggcacgctcgcgcgcgaagccgagcggcacgggatgaacgtgatcgtgtcgaccggc
gacaaggatctcgcgcagctcgtgtccgaccgcgtcacgctcgtcaacacgatgaccaac
gagacgctcgaccgcgacggcgtgatcgcgaagttcggcgtgccgcccgagcggatcatc
gactacctcgcgctgatcggcgacaccgtcgacaacgtgccgggcgtcgagaagtgcggg
ccgaagacggccgtgaagtggctgtcgcaatacgacagcctcgacggcgtgatcgaacac
gcgggcgagatcaagggcgtggtcggcgacaacctgcgccgcgcgctcgacttcctgccg
ctcggccgcacgctcgtgaccgtcgagacggcctgcgatctcgcgccgcatctcgaatcg
atcgaggcgtcgctgaagacggacggcgaagcacgccacctgctgcgcgacatcttcgcg
cgctacggcttcaagacgtggttgcgcgaagtcgagagcgcgcccgccgaaggcggcggc
gccgatgcaccggagggcgaccctgcgccggtgatcgcggcggacatcgtccgcgaatac
gacacgatccagacctgggcgcaattcgacgcgtggttcgcgaagatcgatgcggccgca
ctcaccgcgttcgacaccgaaaccaccgcgctcgacccgatgaccgcccgcctcgtcggc
ctgtcgttctcgatcgagccgggcaaggccgcgtatcttccggtcgcgcatcgcggcccc
gacctgcccgagcaactgccgatcgacgacgtgctcgcgcgcctgaggccgtggctcgaa
tcggccgatcgcaagaaggtcggccagcacctgaagtacgacgcgcaggtgctcgcgaac
tacggcatcgcgctgaacggcatcgagcacgacacgctgctcgaatcgtacgtgctcgaa
tcgcaccgcacgcacgacatggacagcctcgcgctgcgtcatctgggcgtcaagacgatc
aagtacgaggacgtggccggcaagggcgcgaagcagatcggtttcgacgaagtggcgctc
gagcaggccgccgcgtacgcggccgaagatgcggacatcacgctgcagcttcaccaggcg
ctgtatccgcaagtcgcgcgtgaagcgggcctcgagcgcgtgtatcgcgacatcgagatg
ccggtatcgctcgtgctgcgcaagatggagcgcaccggcgtgctgatcgatgacgcgctt
ctgcaggcgcaaagcaccgagatcgcgacgcgcctcatcgagctcgaagggcaggcgtac
gaactggccggcggcgagttcaatctcggttcgccgaagcagatcgggcagatcttcttc
gagaagctgcagttgccggtcgtaaagaaaacgccgagcggcgcaccgtcgaccgacgaa
gaagtgttgcagaagctggccgaggattacccgctgccgaagctgctgctcgagcatcgc
gggctgtcgaagctgaagtcgacctacaccgacaagctgccgcgcatggtgaatccggca
acgggtcgcgtgcacacgaactatgcgcaggccgtcgcggtcacgggccggctcgcatcg
aacgatcccaatcttcagaacattccggtgcgcacggccgaaggccggcggatccgcgaa
gcgttcatcgcatcgcccggccaccggatcgtgtcggccgactattcgcagatcgaactg
cggatcatggcccacatctccggcgacgcgtcgctcttgcgcgcgttcgcgcaaggcgag
gacatccaccgcgcaactgctgccgaagtgttcggcgtgacgccgctggaggtcaactcc
gaccagcgccggatcgcgaaggtcatcaacttcgggctcatctacgggatgagcgcgttc
ggcctcgcgtcgaacctcggcatcacgcgcgatgcggcgaagctctatatcgaccgctac
ttcacgcgctacccgggcgtggcgcagtacatggaagacacgcgcacggcggcgaaggac
aagggctacgtcgaaaccgttttcggccgtcgcctgtggctgccggagatcaacggcggc
aacggcccgcgccgtcaggctgccgagcgcgcggccatcaatgcaccgatgcagggcacg
gcggctgacctgatcaagctctcgatgatcgcggtggacgactggctcacgcgcgaccag
ctcgcgtcgcgaatgatcatgcaggtgcacgatgaactggtgctcgaggtgcccgacgac
gaactgtcgctcgtgcgcgagaaactaccggaaatgatgtgcggtgtggcgaagctgaag
gtgccgctggtcgccgaagtgggcgccggcgcgaactgggaagaggcacactga
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