Burkholderia ambifaria AMMD: Bamb_5616
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Entry
Bamb_5616 CDS
T00398
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
bam
Burkholderia ambifaria AMMD
Pathway
bam02020
Two-component system
bam02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bam00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Bamb_5616
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Bamb_5616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bam03021
]
Bamb_5616
Transcription machinery [BR:
bam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Bamb_5616
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ABI91163
UniProt:
Q0B3W0
LinkDB
All DBs
Position
3:complement(51314..52753)
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AA seq
479 aa
AA seq
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MSVTLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDSNPFLEDGQGDDEAVAET
DAPDHPAEAAAPEPVPDGDDVRPPDGDVSYTAAPAPRTTGRQGDDVSDLSPGEWMAAEPS
LHQQLHDALRLYPLNRRDREAARIVIDALDEDGYLRQELSELLVAADPALLLSEQDLGVA
LRLVQMLDRPGIAARSLSECLLLQLDAIPAGTPALAEAKVIAREHLERLARRETAEIQRR
VGCSQATMQAACLLVRGLDPRPGNHYGSTRGDYVVPDVIVRQVRDEWIVTINPAVLPRAR
LHERYATLFAQSSGERDSPLGQQLQEARWLIRNVQKRFDTIQRVGECIVARQRDFFRYGE
IAMKPLVLRDIAEELDLHESTVSRATGNKYMATPHGTFEFKHFFPRKLEAAGKGVCSASA
AKVLIRDMIAAERHTDPLSDVALAQNLAGRGILLARRTVTKYRQAMKIPPAELRRRDAA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcacgcttgcgctccagatgcgacagcatctggcactcacaccgaggctgcag
caatcgctgcgtctgctgcagctgtcttcgctcgaattccagcaggaattgcggcaggcg
ctcgactcgaatccgtttctcgaagatggccagggtgacgacgaagccgtcgccgagacc
gacgcgccagaccatccggcagaagccgcagcgcccgagcccgtgcccgatggcgatgac
gtgcggccgccggacggcgacgtgtcgtacacggccgcgccggcgccgcgcaccacgggc
cggcagggcgacgacgtcagcgacctgtcgcccggcgaatggatggccgccgagccgtcg
ctgcaccagcaactgcacgacgcgctgcgtctctatccgctgaaccggcgcgatcgcgag
gccgcgcgcatcgtgatcgacgcgctcgacgaggacggctacctgcgtcaggagctgtcc
gagctgctggtcgcggccgatcccgcgctgctgctgtcggaacaggatctcggggttgcg
ttgcggctcgtgcagatgctcgaccgcccggggatcgcagcacgctcgctgtccgaatgc
ctgctgctgcagctcgacgcgattcccgccggcacgccggcgctcgcggaagcgaaggtg
atcgcgcgcgaacatctcgaacggctcgcgcggcgcgagaccgccgagattcagcggcgc
gtcggctgcagccaggcgacgatgcaggccgcgtgcttactggtgcgcgggctcgatccg
cgccccggcaatcactacggcagcacgcgcggcgactatgtggtgcccgacgtgatcgtg
cgccaggtgcgcgacgaatggatcgtgacgatcaacccggccgtgctgccgcgcgcgcgg
ctgcatgaacgctatgcgacgctgttcgcgcagtcgagcggcgagcgcgattcgccgctc
ggccagcaattgcaggaagcgcgctggctgatccgcaacgtgcagaagcgcttcgacacg
atccagcgcgtcggcgaatgcatcgtcgcgcggcagcgtgacttcttccgctacggcgag
atcgcgatgaagccgctcgtgctgcgcgacatagcggaagagctcgatctgcacgaatcg
acggtgtcgcgtgcgacgggcaacaagtacatggccacgccgcacggcacgttcgagttc
aagcacttcttcccgcgcaaactggaagcggccggcaagggcgtgtgctcggcgtcggcc
gcgaaggtgctgatccgcgacatgatcgcggccgagcgccataccgacccgctgtccgat
gtcgcgctcgcgcagaacctcgcggggcgcggcatccttcttgctcgtcgtacggtgacc
aagtatcgccaggccatgaagatcccgccggccgaattgcgtcggcgcgacgccgcctga
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