Bacillus velezensis UCMB5033: RBAU_0466
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Entry
RBAU_0466 CDS
T02795
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase; cold shock
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bama
Bacillus velezensis UCMB5033
Pathway
bama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBAU_0466 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bama03019
]
RBAU_0466 (cshA)
03009 Ribosome biogenesis [BR:
bama03009
]
RBAU_0466 (cshA)
Enzymes [BR:
bama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBAU_0466 (cshA)
Messenger RNA biogenesis [BR:
bama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBAU_0466 (cshA)
Ribosome biogenesis [BR:
bama03009
]
Prokaryotic type
rRNA helicases
RBAU_0466 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
DD_DDX21-DDX50
SBF_like
Motif
Other DBs
NCBI-ProteinID:
CDG28441
LinkDB
All DBs
Position
516099..517583
Genome browser
AA seq
494 aa
AA seq
DB search
MTITFQDFQLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP
LVEKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMATKEPDSTPVRLTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKNNNRSSYDKKRSS
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagattttcaattaagttctgatctcatgaaggcaattaatcgt
atgggatttgaagaagcaacgccgattcaggcacaaacgattccgctcggactttcaaat
aaagacgtcattggacaagcgcaaacaggtacaggtaaaacagctgcgtttggtataccc
cttgttgaaaaaatgaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagagttatataaaatcggacaagataagcgtgcg
aaagtactgcctatttatggtggacaggatatcggacgtcagatccgcgcattaaagaaa
aacccgcatatcatcgtaggtacgccggggcgtcttcttgaccatatcaaccgccgcacg
atccgtttaaacaacgtgaatacggttgttatggatgaggctgatgaaatgctgaacatg
ggattcattgatgatattgaatccattctctcaaacgtgccgagcgagcaccaaacgctc
ttattctcagcaacaatgcctgcgccgatcaaacggatcgcagagcgtttcatgactgag
ccggaacacgtaaaagtaaaagcgaaagaaatgactgtatcaaacattcagcagttctac
ttggaagtgcaggaacgcaaaaaattcgatacgctgactcgtcttcttgacattcagtct
ccggaacttgcgatcgtattcggacgtacgaaacgccgtgtcgatgagcttgctgaagcc
ctgaaccttcgcggatatgcggctgaaggaattcacggcgacttaacgcaggcgaaacgt
atggttgcgcttcgcaagtttaaagaaggtgcgatcgaagtgcttgtagcgactgacgtt
gccgcccgcggacttgatatctcaggcgttacccacgtttacaactttgacgtgcctcaa
gatcctgaaagctacgttcaccgtatcggaagaacgggccgtgcaggaaaaacgggtatg
gcgatgacgtttatcacaccgcgtgagaaaagcatgcttcgcgcgattgaacaaacgaca
aaacgcaaaatggaccgcatgaaagagccgacgcttgacgaagcattagaaggacagcag
caggtgacggttgaccgtctgcgcacggcgatcagcgaaaacaacctgaacttctacatg
acggcagctgcggaattgttagaagatcatgatgcagtgacagttgtggctgcagccatt
aaaatggcgacaaaagagccggacagcacacctgtacgcctcactgatgaagcgccgatg
gtcagcaaacgctataaaaaccagcgtacttctaagcgcagagacggccaaggcggcggc
taccgcggcggcaaagggaaaaacaacaaccgttcttcctacgataaaaaacgctcaagc
gaccgccgttcttcaggtgacagacgccagaaaaaatcatactaa
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