Bacillus velezensis NAU-B3: BAPNAU_0107
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Entry
BAPNAU_0107 CDS
T02859
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAPNAU_0107 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bamb03021
]
BAPNAU_0107 (rpoC)
03400 DNA repair and recombination proteins [BR:
bamb03400
]
BAPNAU_0107 (rpoC)
Enzymes [BR:
bamb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAPNAU_0107 (rpoC)
Transcription machinery [BR:
bamb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAPNAU_0107 (rpoC)
DNA repair and recombination proteins [BR:
bamb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAPNAU_0107 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CDH93888
LinkDB
All DBs
Position
126509..130108
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAINKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTEEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPDRFFLDKGA
DVKAVIAEQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFRYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVLKQFRRGLITEEERYERVISIWSSAKDVIQGKLMKSL
DEVNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTEIIERLE
ERLIGRFARKQIKHPETGAVLINENELIDEDKALEIVESGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEIDGTIAEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVAEGDQITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMNYRKVKPVSNVQPSEDMVPAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccggataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacattgaaa
cctgaaaaggacggcctgttctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcggcaagtacaagcgggttcgttataaaggcgtagtttgtgaccgttgcggagtt
gaagtaacgcgggctaaagtccgtcgtgagagaatggggcatattgaactggctgccccg
gtttctcacatttggtatttcaaaggtattccgagccgtatgggtcttgtattggatatg
tcaccgcgtgcgctggaagaagttatttactttgcttcttacgtcgtaactgacccggcc
aatacaccgctcgaaaagaaacagcttttatctgaaaaggaataccgtgcgtatctggat
aagtacggaaacaaattccaagcctctatgggtgcggaagccattaataaacttctgcag
gacatcgaccttgtcaaagaagttgatatgttaaaagaagagctgaagacttctcaagga
cagcgccgtacacgtgcgatcaaacgccttgaagtgcttgaagccttccgtaattcagga
aacaagccgtcttggatgatcctcgacgtgcttccggttattccgcctgaattaagaccg
atggttcagcttgacggcggacgtttcgcaacgtctgacctgaacgacctttaccgtcgt
gtcatcaaccgtaataaccgtttaaaacgtctgttagacctcggcgcgccaagcatcatc
gttcagaacgaaaaacgtatgcttcaggaagcagtcgatgctctgattgacaacggacgc
cgcggccgtccggttaccggaccgggtaaccgtccgcttaaatctctttctcacatgctg
aaagggaaacaagggcgtttccgtcagaaccttctcggtaaacgtgtagactactcagga
cgttccgttatcgtcgtaggtccgcatctgaaaatgtatcagtgcggtttgccgaaggaa
atggcgcttgagctcttcaagcctttcgtcatgaaagagcttgttgaaaaaggccttgct
cacaatatcaagagcgcaaaacgcaaaatcgaacgcgtgcagcctgaagtatgggatgta
cttgaatctgtcattaaggagcatccggtcttactgaaccgtgcccctactcttcacaga
ttaggtatccaggctttcgaaccgacgcttgttgaaggacgcgccatccgtcttcacccg
ttagtatgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgtacct
ttatcagctgaggctcaagctgaagcacgtattctgatgcttgcagcccaaaacatcttg
aaccctaaagatggtaaaccggttgttacgccgtctcaggatatggtattaggaaactac
tacctgacgcttgagcgcgccggagcagtcggcgagggtatggtcttcaagaatacagac
gaagcgcttcttgcttatcaaaacggttatgttcaccttcatacgagagtagctgttgca
gcgaactcccttaagaatgtgacatttactgaagaacagcgttcaaaattgttaattaca
actgtcggtaagctcgtcttcaatgaaattcttccggaatcattcccttacatgaatgaa
ccaacgaagagcaacattgaagagaagacacctgaccgtttcttcttagataaaggtgct
gacgtaaaagctgtgattgctgagcagccgatcaacgcaccgtttaaaaaaggtattctc
ggtaaaatcatcgcggaaatctttaaacgattccatatcacggaaacgtctaaaatgctt
gaccgcatgaaaaacctcggtttcagatattcaacgaaagccggcatcacagtaggggtt
tctgatatcgtcgttctcgatgacaaacaggaaatccttgaagaagcacaaagcaaagtt
gataatgtcctgaaacagttcagacgcggtttaatcaccgaagaagaacgttatgaaaga
gtcatttcaatttggagttcagcgaaagatgttatccaaggcaaactgatgaaatcatta
gacgaagtcaacccgatctacatgatgagtgactcaggagcccgtggtaacgcatctaac
tttacacagcttgcgggtatgcgcggtctgatggccaacccggctggacgaatcattgaa
ttgccgattaaatcaagtttccgtgaaggtctgacagtattggagtactttatctccact
cacggtgcgcgtaaaggtcttgccgataccgccctgaaaacagctgactcaggttacctt
acacgccgtcttgttgatgttgcgcaggatgttatcattcgtgaaacagattgcggaaca
gaccgcggtattcttgcaaaaccgctcaaagaaggcacggaaatcatcgagcgtctggaa
gagcgtctgatcggacgtttcgccagaaaacagatcaaacatcctgaaacgggtgctgtg
ctcattaacgaaaatgaattgatcgatgaagataaagcgctggaaatcgttgaatccgga
atcgaagaagtgtggatccgttccgcgttcacatgtaacactcctcatggtgtatgtaaa
cgatgctacggacgtaaccttgcaaccggaactgatgttgaagtcggcgaagcagtaggt
attatcgccgctcaatctatcggtgagcctggaacacagttaacgatgcgtacgttccac
acaggcggggttgccggagacgatatcacacaaggtcttccgcgtatccaggagcttttc
gaagcgcgtaatccgaaaggtcaagcgacgatttctgaaattgacggtacaattgccgaa
atcaatgaagtacgcgacaaacagcaggagattgttgttcagggcgctgttgagacacgt
tcatacacggcaccttacaactcacgcctgaaagtggctgagggtgatcagattacccgc
ggccaagtgctgacagaaggttctatcgatccgaaagaacttcttaaagtcactgacctg
acaacggttcaggaatatcttctgcatgaggttcagaaggtttaccgtatgcagggtgtt
gaaatcggcgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtccgtgtg
atcgatgccggagatactgatgttctccctggcacattgcttgatattcaccaattcaca
gaagcgaacaaaaaagtgctgcttgaaggcaatcgacctgctacaggccgtcctgtcctt
ctcggtatcacgaaagcttcactcgagacggattcattcttgtctgccgcatcattccaa
gaaacaacacgcgttcttactgatgctgcgattaaaggcaagcgcgatgaacttctcggc
ctgaaagagaatgttatcatcggtaaactggttccggccggtaccggtatgatgaattac
agaaaagtaaaacctgtttcaaacgttcagccttcggaagatatggttccggctgaataa
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