Bacillus velezensis NAU-B3: BAPNAU_0435
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Entry
BAPNAU_0435 CDS
T02859
Symbol
ydbR
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAPNAU_0435 (ydbR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamb03019
]
BAPNAU_0435 (ydbR)
03009 Ribosome biogenesis [BR:
bamb03009
]
BAPNAU_0435 (ydbR)
Enzymes [BR:
bamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BAPNAU_0435 (ydbR)
Messenger RNA biogenesis [BR:
bamb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAPNAU_0435 (ydbR)
Ribosome biogenesis [BR:
bamb03009
]
Prokaryotic type
rRNA helicases
BAPNAU_0435 (ydbR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
NAT10_TcmA_helicase
CMS1
DD_DDX21-DDX50
Motif
Other DBs
NCBI-ProteinID:
CDH94216
LinkDB
All DBs
Position
481443..482927
Genome browser
AA seq
494 aa
AA seq
DB search
MTITFQDFQLSSDLMKSINRMGFEEATPIQAQTIPLGLLNKDVIGQAQTGTGKTAAFGIP
LVEKMNPESPNIQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKK
NPHIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSDHQTL
LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS
PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV
AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQTT
KRKMDRMKEPTLDEALEGQQQVTVDRLRTAISENNLNFYMTAAAELLEDHDAVTVVAAAI
KMATKEPDSTPVRLTDEAPMVSKRYKNQRTSKRRDGQGGGYRGGKGKNNNRSSYDKKRSS
DRRSSGDRRQKKSY
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgactataacgtttcaagatttccaattaagttctgatctcatgaaatcaatcaatcgt
atgggatttgaagaagcaacaccgatccaggcacaaacgattccgctcggacttttaaat
aaagatgtcatcggacaagcgcaaacaggtacaggtaaaacagctgcgttcggtataccc
cttgttgaaaaaatgaaccccgagtctcctaatattcaagcaatcgtaatcgcgccaacc
cgtgaattagccattcaagtatctgaagagttatataaaatcggacaagataagcgtgcg
aaagtactgcctatttacggcggccaggatatcggacgtcaaatccgcgcattgaagaaa
aacccgcatatcatcgtaggtacgccggggcgtcttcttgaccatatcaaccgccgcacg
atccgtttaaataacgtgaacacggttgtcatggatgaggctgatgaaatgctgaacatg
ggattcattgatgacattgaatccattctctcaaacgtgccgagcgaccaccaaacgctc
ttattctcagcaacaatgcctgcgccgatcaaacggatcgcagagcgtttcatgactgag
ccggaacacgtaaaagtaaaagcgaaagaaatgactgtgtccaacattcagcagttctac
ttggaagtgcaggagcgcaaaaaattcgatacgctgactcgtcttcttgacattcagtct
ccggaacttgcgatcgtattcggacgtacgaaacgccgtgtcgatgagcttgctgaagcc
ctgaaccttcgcggatatgcggctgaaggaattcacggcgacttaacgcaggcgaaacgt
atggttgcgcttcgcaagtttaaagaaggtgcgatcgaagtgcttgtagcgactgacgtt
gccgcccgcggacttgatatctcaggcgttacccacgtttacaactttgacgtgcctcaa
gatcctgaaagttacgttcaccgtatcggaagaacgggccgtgcaggaaaaacgggtatg
gcgatgacgtttatcacaccgcgtgagaaaagcatgcttcgcgcgattgaacaaacgaca
aaacgcaaaatggaccgcatgaaagagccgacgcttgacgaagcattagaaggacagcag
caggtgacggttgaccgtctgcgcacggcgatcagcgaaaacaacctgaacttctacatg
acggcagctgcggaattgttagaagatcatgatgcagtgacagttgtggctgcagccatt
aaaatggcgacaaaagagccggacagcacgcctgtacgcctcactgatgaagcgcctatg
gtcagcaaacgctataaaaaccagcgtacttctaagcgcagagacggccaaggcggcggc
taccgcggcggcaaagggaaaaacaacaaccgttcttcctacgataaaaaacgctcaagc
gaccgccgttcttcaggtgacagacgccagaaaaaatcatactaa
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