Bacillus velezensis NAU-B3: BAPNAU_1659
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Entry
BAPNAU_1659 CDS
T02859
Symbol
yorK
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03410
Base excision repair
bamb03430
Mismatch repair
bamb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BAPNAU_1659 (yorK)
03430 Mismatch repair
BAPNAU_1659 (yorK)
03440 Homologous recombination
BAPNAU_1659 (yorK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamb03400
]
BAPNAU_1659 (yorK)
DNA repair and recombination proteins [BR:
bamb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BAPNAU_1659 (yorK)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BAPNAU_1659 (yorK)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAPNAU_1659 (yorK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5802
Rib_mS39_PPR
Toprim
Motif
Other DBs
NCBI-ProteinID:
CDH95440
LinkDB
All DBs
Position
1749485..1751215
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AA seq
576 aa
AA seq
DB search
MAYKLIGNNDYNFNPLSTILKNRGIENPKSFIDVNQSSVIHFSKLDNIDKASDCLIKHLE
NKNKIFVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFINTIPDDVDLVI
IPDAGSSQFEEHEALNKRGTEIIVIDHHECERESEHAIVVNNQLSPNYSNKTLTGAGMAY
KFCQAVDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QDFSTKGDKNIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETEL
VSIHDDTVRILGNLKAKQKRIADAAGAEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLV
ANQLAEEYKKPVLLARNDPDKGEDILSGSIRGYDKGFIKDFKKVLIDTGLFEFVEGHPNA
AGFAIKRQNLILVNKVLNEKFKDIDIEEDVQNVDFEIPANQLRKEFLIKLYSYKDYWGYK
VEEPLVAITELEVDVDQIEHIGKKNKTTIKFKHGDIEYIRFKSDTEYFEKLTQSNGTLIL
NVVGKARVNEYKGRQTPQIEIYDLEVVCTKKKELVF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtggcttataagctcattggcaacaatgattataatttcaatccattatcgacaatttta
aaaaacagagggattgaaaatccgaagagctttattgatgtgaaccagagctcagtcatt
catttttcaaaactcgataacattgataaagcatctgattgtttaataaagcatttagag
aataaaaataaaatatttgttcaagtggatagcgatgtagatgggtacacatccagttca
atcattatcaattatataaagaagatttgtccgaaagcaaatatacattacagaattcaa
gatgggaaggaacatgggatttttattaatacaattcctgatgatgttgacttagtcata
atcccagacgcaggttcaagtcaatttgaggaacatgaggctcttaataagagaggcaca
gaaataattgttattgatcaccatgaatgtgaacgagagtctgaacatgcgatcgtagta
aataatcaactttcacctaattattcgaataaaactctaacaggtgcaggtatggcatat
aaattttgccaggcagttgatgaaaagctaaataaaaatgaagccgaacaattcttagac
cttgtatctattggtaacattgctgattcggctgattcaagaaaccttgaaaccaggtat
tttatgaatgaaggcttgaagaaaattaagcatccattattaaagaagctgtttaagaag
caagatttttcaaccaaaggtgacaagaacatacagaatacacagttctttattaaccct
ttaattaacgctgccattagggttggaagcagtgaagaaaaagatcaaatgatgagagca
ttccttctttctaaagaaaaggttccctacaaaaaacgtgggcaaagtgaaacagagctt
gtgtcaatacatgatgacacagttagaattctaggaaatctaaaagctaagcagaaacgg
attgcagatgcagctggagcggaaattaaaaatagaatagaggaaaaaagtttaacagcg
aataaagtactcattgtttacattgaaggaattctagataagagtctaactggtctggtt
gccaatcagcttgcagaagaatataaaaagccggtcttgttagccagaaacgatcccgat
aaaggtgaagatatcttgagtggctctatacgtgggtatgacaaagggtttataaaggat
tttaagaaagtgcttatagatactggattgtttgagtttgttgaaggtcacccaaatgca
gctggttttgcaattaaacgacagaatttaattctggtgaacaaagtgctgaatgaaaaa
tttaaagacattgatattgaagaagatgttcaaaatgttgattttgagataccagctaat
caacttagaaaggaatttttaattaagctgtatagctataaagattattggggctataag
gtcgaagaaccattagtagcaataacagaactagaagttgatgttgatcaaattgaacac
atcgggaaaaagaacaagacaacaatcaagtttaaacatggagatattgaatacatacgc
tttaaaagcgatacagaatactttgagaaacttactcaatcaaatggaactttaatactt
aatgttgttggtaaggcaagggtaaatgaatataagggtagacaaacacctcaaattgaa
atttatgacttggaggtggtttgtacaaagaaaaaagagcttgtgttttaa
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integrated database retrieval system
