Bacillus velezensis NAU-B3: BAPNAU_2089
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Entry
BAPNAU_2089 CDS
T02859
Symbol
rnjB
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAPNAU_2089 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamb03019
]
BAPNAU_2089 (rnjB)
Messenger RNA biogenesis [BR:
bamb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAPNAU_2089 (rnjB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CDH95869
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Position
complement(2266103..2267806)
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AA seq
567 aa
AA seq
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MMDGYETRRIQILKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEML
GIDVVIPDISYLVERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLTLALLREKL
KQYGHNRKADLREVHSKSVITFESTKVSFFKTIHSIPDSVGVSFKTSLGSIVCTGDFKFD
QTPAYHQSCDIGEIAKIGNSGVLALLSDSANAERPGYTPSEAYVSGEISDAMNSSENRVI
IAVFASNINRIQQVIQAAVQNGRKLAIAGKNLQNVLQLGRKLGYIEAEDEMFIPVQDVKK
YPKREVAIVTAGSHGEPLAALTRMAKQAHKQLNIEEGDTVVIASTPIPGHELIYSKTVNL
LARAGAQVIFAQKRVHVSGHGSQEELKLMLNLLKPKYLIPVNGEFRMQKAHSKIAEEIGM
KRSDIFLIEKGDVVEFRGQNVKIGDKVTYGNVLIDGLGVGDIGNIVLRDRRLLSQDGILI
VVISLDKQKKNLVSGPEIITRGFVYVRESEGLIVQATELVRSIVTEATETSAVEWSTLKQ
AMRDALNQFLYEKTKRKPMIIPIIMEV
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgggtatgagactaggaggatacagattttgaaaaagaaaaatacagaaaac
gtcagaattatcgcccttggcggcgtcggagaaattgggaagaacctatatgtcattgaa
attgactcagacatatttgtagtggatgcagggctgatgcaccctgaaaatgaaatgctc
ggtattgatgtcgtcattccggatatttcctacttagtagaacgggctgaccgcgtgaag
gccatctttctgacacacgggcacgatgaaaacatcggaggcgtcttttatttattgaac
aagctgtcggtgccggtatacggaacgaagcttactcttgcattactgagagaaaaactc
aagcagtacgggcataatcgaaaagctgatttgcgtgaagttcactctaaatcagtcatt
acatttgaatcaacgaaagtatcgttctttaaaacaattcacagtattccggattcagtg
ggagtcagcttcaaaacatcacttggctctattgtatgcacgggagactttaaatttgac
cagacgcctgcttatcaccaatcatgtgatattggcgaaattgccaaaatcggaaacagc
ggcgtgctcgccctgctttctgacagcgccaatgcggagcgcccggggtatactccgtca
gaagcatatgtaagcggtgaaatttccgatgcgatgaacagttcagaaaaccgtgtcatc
attgctgtattcgcgtctaatatcaaccggatccagcaagtgatacaggctgccgtccag
aacggccgcaaacttgcaatcgccggaaaaaatctgcaaaacgtgcttcagcttgggcgc
aagctcggctatattgaagccgaagatgaaatgtttattcctgtgcaggatgtgaaaaaa
tatccgaagcgggaagttgcaattgttacagccggaagccatggtgagccgctggccgct
cttacgcggatggccaagcaggcgcacaagcagcttaacattgaagaaggagacaccgtt
gtcattgcatcaacaccgattccggggcatgaattgatatattccaaaaccgtcaacctg
cttgcccgcgccggcgctcaagtcattttcgcccaaaaacgcgtgcatgtgtccggtcac
ggttcgcaggaagaattgaaactcatgcttaatttgctgaaaccgaaatatttaattccg
gttaacggtgaattcagaatgcaaaaagcgcattccaaaatcgcagaagagatcggcatg
aaacgcagcgacattttcttgattgaaaaaggtgacgtcgttgaattccgcggtcagaat
gtgaaaatcggggataaagtcacgtacggaaacgttctgattgacggcctcggagtcggc
gacatcggcaacatcgtgctgagagaccgccgcttattatcacaagacggcattctcatc
gtcgtgatctcactcgataagcagaaaaagaacctcgtatcaggtcctgagatcattacg
cgcggtttcgtgtatgtcagagaatcagaaggtttaattgtacaagctactgagctcgtc
cgctctatcgtgactgaagcgacggaaacatctgccgtagaatggtccacgctgaaacaa
gcaatgcgtgatgcgctgaatcaattcctttatgaaaaaacaaaacgcaagccgatgatc
attccgatcattatggaagtataa
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