Bacillus velezensis NAU-B3: BAPNAU_2328
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Entry
BAPNAU_2328 CDS
T02859
Symbol
rnjJ
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAPNAU_2328 (rnjJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamb03019
]
BAPNAU_2328 (rnjJ)
Messenger RNA biogenesis [BR:
bamb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAPNAU_2328 (rnjJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF5548
DUF4453
Motif
Other DBs
NCBI-ProteinID:
CDH96108
LinkDB
All DBs
Position
2543804..2545471
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRMPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFKV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtgaaaaatgaccagactgccgttttcgccctcggcggattgggcgagatc
gggaaaaatacgtacggggtgcagtttcaggatgaaattgtactgattgatgcgggaatc
aagttcccggaagatgaacttctcggcattgattacgtaatccccgattacacgtattta
gtaaaaaatgaagataaaattaaaggtctgtttatcacccacggtcacgaagaccatatc
ggcggtattccgtacctgctcagacaagtaaatattcccgtttacggcggtaaactcgcg
atcggcttacttcggaataaacttgaagagcacgggctgttaagacagaccaaattaaac
atcatcggtgaagacgacatcgtgaagttccgcaagacgtctgtatccttcttcagaacg
acacacagcattccggattcatacggaatcgtcgtcaaaacaccgccgggcaatatcgta
cataccggggactttaagttcgatttcacaccggtaggcgaaccggcaaacttgacaaag
atggctgaaatcgggaaagaaggcgttctgtgcctgctttctgacagtacaaacagtgag
gttcctgatttcaccatgtcagaacgccgcgtaggcgaaagcattcacgatattttccga
aaagtggacggcagaattatatttgcgacattcgcttcaaatatacaccgtcttcagcag
gtgattgaagcagccgttttaaacggcagaaaagttgccgtattcggacgcagtatggaa
tcggctattgaaatcggacaaaatctcggttacattacctgtcctaaaaatacgtttatt
gagcataacgaaatcaatcgtatgcctgccaataaggtaacgattttatgtacgggaagc
caaggtgaaccgatggcggcgttatcacgcatcgctaacgggacgcaccggcagatttcc
attaatcccggagatacggtcgtcttttcttcctctccgattcccggaaacacaatcagc
gtaagccgcaccatcaaccagctgtaccgtgcgggcgcagaagtcattcacggttcattg
aatgacattcatacatccggacacggcggacaggaagagcagaaattaatgctccgcctg
atcaaaccgaagttctttatgccgattcacggtgagtacagaatgcagaaaatgcacgtc
aaactcgcgactgattgcggcatacctgaagaaaactgctttatcatggataatggcgaa
gtgctggccctcaaaggcgaagaagccgctgtggcaggcaaaattccgtccggctccgtt
tacattgacggaagcggaatcggtgatatcggcaatatcgtgctccgcgaccgccgcatt
ctttcagaagaaggccttgttatcgttgttgtcagcatcaatatggacgactttaaggtt
tcggcgggacctgatttaatctcaagaggttttgtttacatgagagaatccggtgatttg
atcaatgacgcgcagcagctcatttcgaaccatctggagaaagtaatggatcggaaaaca
acgcagtggtccgaaattaaaaacgaaattaccgatacactagctccgttcctatacgaa
aaaacaaaacgccgcccgatgatccttccgatcattatggaggtctaa
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