Bacillus velezensis NAU-B3: BAPNAU_2610
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Entry
BAPNAU_2610 CDS
T02859
Symbol
yjcD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03420
Nucleotide excision repair
bamb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAPNAU_2610 (yjcD)
03430 Mismatch repair
BAPNAU_2610 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamb03400
]
BAPNAU_2610 (yjcD)
Enzymes [BR:
bamb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAPNAU_2610 (yjcD)
DNA repair and recombination proteins [BR:
bamb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAPNAU_2610 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BAPNAU_2610 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CDH96390
LinkDB
All DBs
Position
2792532..2794817
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AA seq
761 aa
AA seq
DB search
MKCARMNNRTIHLHKYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKG
DFTACEKACAAEEPQAEKEKEEYKKAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPF
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYHI
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
AHAVVKKNKKRYEKTLSAVKDGVHNPVLFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
PALFLKQSALQTLKALSITEDCTMVKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgaatgaataaccgaacaatacatttacataaatattctagagaacat
taccaattcctttttgaagaagctcagaaaggaaatattttttgcgcacattgtgagcag
cccgtcttgatgcggctttcgattttagagcagccggcattttatcaccggcaaaaggga
gacttcaccgcctgtgaaaaagcatgcgcggccgaggaaccgcaagcggagaaagaaaaa
gaagagtataagaaagccggcatgttccgcctgccgaaaggaaaagcgatttcagagaat
ccgaaaccgatcgtctcagaatggaaaagcccgaaaaaagtgcctgcggccgaaccgttt
tcaccaacatccgaggcggctgatacatctttgttccccggcatcggcctgaaccgtgaa
cagatgaaggcagttactgaaacggacgggcctttgttagtgcttgccggagcgggaagc
ggaaaaacaagggtgctgacagcacgcgccgcccatatgattgaacacctcggcatttca
cctgagaatatgctgcttgtgacctttacgacaaaagccgtcgccgaaatgaaagagcga
atggcaaatgagtacggactggcagccggaaaagtctcccgtctcgtgaccggaacattc
cacagttttttctataaaatactctatcattatgattcttcaaaatggaacggcagccag
cttttaaaaatggagtggcaaaaagagcaatatgtgaaaaaggcgctctatgaagaaaat
ttggatgaaaaagagtttcccgtcgaccaggcgcttcagcttatcggctgctggaaaaac
acgtatctcccccatgagaccattccgcttgcggacgactgggagaaaaaagtgtacagg
ctctacgaacattacgaacggcaaaagcgggaaaaacggcaatttgattttgatgacatg
gcccaaggctgttatgaactgtttcaaagccggcctgatattctcgcacagtaccaaaac
agattttctcatattttgattgatgagtttcaagatatcaatcctgtccagtaccacatt
atgcaaatgatcgcaagccctgagaataacctgtgctgcgtgggtgatgacgaccaatcc
atttatgcgttccgcggcagcagcccgtctttcattttagattttcaaaaggattatccg
gctgcaaagaccatttatttaacggcaaattaccgatcgccgcatccgatcgtctcaagc
gctcatgccgtcgtaaagaaaaataaaaaacggtatgaaaaaacactttctgccgtcaaa
gacggcgttcacaatcccgtgctgttttatccttacgatgaagaagaagaagcgaccatg
atcgtttcggatatgaaagagaaaattcaaaacggggcgagtcctgacgattttgccgtg
ctttaccggacaaacagcgccggacgggccatttatgaaagactgcaccaatcatcgatt
ccttatcatgccgacaggggtgtgcagacgttctacagccgcagaatcgtacgccagatc
ctcgcctacttatatgcgagtcagaatgaagatgatccggatgcggtgaaagacctgctg
cccgccttatttttaaagcaatccgccctgcaaacgttaaaggcgctgtcaatcacggaa
gattgcacgatggttaaggcactgacgaaactgcctgacctgaagccttttcaaataggg
aagatcaagcagatcgttccgtttttcgcaagcatccggacaatgaagccggttgaagcc
atcacctttgcagaaagcaaaatgggtttttccgagtatttaaaaaaacggggcaatgag
gggaacaaactggaaaaaggctctgatgatctcagggatgtcaaagtggccgccaaaaaa
ttcaaaacgattcccgattttcttgcgcatgtcgatcatatgcgcgccgctgagaatctg
aaaaccgatgaaaacggcgtcgaactgctgaccattcaccgctctaaaggtcttgaattc
aatacggtctatattttaggcgcggctgacggctcgatcccccatgacttcgcgcttgag
acggcgagacagggcgatcccgctccgctcgaagaagaaagacggcttctgtatgtcgca
atgacaagggccatgcagcatttatatgtatcttgtcccgcatacaggcggggaaaaaca
gcgcgcagctcaagatttctcgagccccttcttcggacggacagacggagcgcactcagg
atataa
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