Bacillus amyloliquefaciens CC178: U471_16930
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Entry
U471_16930 CDS
T02893
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U471_16930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamc03019
]
U471_16930
03016 Transfer RNA biogenesis [BR:
bamc03016
]
U471_16930
Enzymes [BR:
bamc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U471_16930
Messenger RNA biogenesis [BR:
bamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U471_16930
Transfer RNA biogenesis [BR:
bamc03016
]
Prokaryotic type
tRNA degradation factors
U471_16930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AGZ56395
LinkDB
All DBs
Position
1649724..1651847
Genome browser
AA seq
707 aa
AA seq
DB search
MGQEKHVFTIDWAGRQLTVEAGQLAKQANGAVMVRYGDTAVLSTATASKEPKPLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAVLASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQDCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRIDGKFVINPTVDQLEKSDINLIVA
GTKDAINMVEAGADEVPEEIMLEAIMFGHEEIKRLIAFQEEIVAAVGKEKTEIELYEIDE
ELSEKVKSLAEPDLLSAIQVHEKHAREDAINEVKNAVVAKFEEEEHDEDTIKKVKQTLSK
LVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSVCTLGAL
GDVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPNEK
DFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLT
DIQGMEDALGDMDFKVAGTEKGVTALQMDIKIEGLSREILEEALQQAKKGRMEILNSMLS
TLGESRKELSQYAPKILTMNINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISS
TDESSNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELALERV
GKVEDVVKIGDEILVKVTEIDKQGRVNLSRKAVLREEKEKEQEQQQS
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagagaaacatgtctttaccatagattgggccggcagacagcttacagtagaa
gccggccagcttgccaaacaggcaaacggcgctgtcatggtccgctacggcgatactgca
gtgctcagcacagcaaccgcatcaaaagaaccgaaaccgctagattttttcccgcttacc
gttaactatgaagaaagattatacgcagtaggtaaaattccgggcggttttattaaaaga
gaaggccgtccaagtgaaaaggcagttttagccagccgtctgatcgaccgtccgatccgc
ccgcttttcgcagacggattccgtaacgaagtacaggtcatcagcattgtcatgagtgtt
gatcaggactgctcatctgaaatggctgcaatgttcggttcatcactcgctctttgcgtt
tccgatatcccgtttgaaggcccgatcgcgggtgtgacggtaggccgcattgacgggaaa
ttcgtcatcaatccgacggttgaccagcttgaaaaaagtgatatcaacctcatcgttgca
ggcacaaaagacgccatcaacatggtggaagccggagcggatgaagttcctgaagaaatc
atgcttgaggcgattatgttcggtcacgaagaaattaagcgcctgatcgcattccaagaa
gaaatcgtcgcagcagtcggcaaagagaaaacagaaatcgaactgtatgaaattgacgaa
gagctcagcgaaaaagtaaaaagccttgcggagccggatcttctcagcgccattcaggtt
cacgaaaaacatgctcgcgaagacgcgatcaatgaagtgaaaaatgcagttgtcgcgaaa
ttcgaagaagaagagcatgatgaagatacgattaaaaaagtgaaacagacactgtctaaa
ctcgtgaaaaacgaagtgcgccgtttgatcacagaagaaaaagtccgtccggacggacgc
ggtgttgatcagatccgcccgctttcttcagaagtcggccttctgccgagaacgcacggc
tccgggctgtttacgagaggacagacgcaggcgctcagcgtatgtacattaggcgccctt
ggggacgttcagattcttgacggtttaggcgtggaagaatcaaaacgctttatgcatcat
tataacttcccgcagttcagcgtaggggagacaggcccgatgcgcggaccgggacgccgt
gagatcggtcacggtgctcttggagagcgtgcgcttgagccggtcattccgaatgaaaaa
gacttcccgtatacggtccgcctcgtatccgaagtgcttgaatcaaacggttccacttca
caggccagcatttgcgcgagcacgcttgccatgatggacgcaggtgttccgattaaagcc
cctgttgcgggtatcgcgatgggacttgtgaaatcaggcgagtactatacggtattaacg
gatattcaagggatggaagacgccctcggtgacatggactttaaagtagccggcacggaa
aaaggcgtgacagcgctgcaaatggacattaaaattgaaggtctttcaagagaaattctt
gaagaagcgcttcagcaggcgaaaaaaggaagaatggaaatcttgaacagcatgctcagc
acgcttggtgaatcaagaaaagaactttctcaatatgcgccgaaaattttaacgatgaac
attaatccggataaaatccgtgacgttatcggaccgagcggtaaacaaatcaacaaaatc
attgaagataccggtgttaaaattgacattgaacaagacggcaccatctttatttcttct
actgatgaaagcagcaaccaaaaagcgaaaaaaatcatcgaagatcttgtcagagaagtc
gaagtcggacagctttacctcggtaaagtcaaacggattgagaaattcggcgctttcgtt
gaaatcttcagcggaaaagacggtctcgttcacatctctgaactagcgctcgaacgggtc
ggcaaggttgaggatgttgtgaaaatcggtgacgaaatccttgtgaaggtaactgaaatt
gacaaacagggacgagtgaatctgtcgcgtaaagcagtgctgcgcgaagagaaagaaaaa
gaacaggaacaacaacaatcttaa
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