Bacillus amyloliquefaciens CC178: U471_19530
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Entry
U471_19530 CDS
T02893
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U471_19530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamc03019
]
U471_19530
03400 DNA repair and recombination proteins [BR:
bamc03400
]
U471_19530
Enzymes [BR:
bamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U471_19530
Messenger RNA biogenesis [BR:
bamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U471_19530
DNA repair and recombination proteins [BR:
bamc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U471_19530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGZ56655
LinkDB
All DBs
Position
complement(2013050..2014828)
Genome browser
AA seq
592 aa
AA seq
DB search
MLEKAQSLLAHYFGYDSLRAGQKQAIQSVAEKRKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLT
SSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYDKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGENEAEACGACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDQDLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagagaaaagaaaaaacacggtctgcattatg
ccgacagggggcggaaaatcaatctgctatcagattcccgcactgctgtttgaaggaacc
acaatcgttatttcccctcttatttccttaatgaaagatcaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcacccagacaagccgtgacattcatgagcgc
ctgaccggtttgaaacaaggggcttaccggctcttttacatcacaccggagcgtttgact
tcttctgaattcattcacatcctgcagaatattacggttcctcttgtcgccattgacgaa
gctcactgtatatcgcaatggggacatgatttcaggccgagttaccggaatatcgaaatc
ctttttaatgaattaaaagaaccgcccgtcatcatcgcattaacggcgacggctacgcct
gaggttcatgatgacatctgcaaacagcttcatattaagaaagaacaaactgtatatacc
ggttttgccagagagaatttaacgtttaaagtagtaaagggcgaaaacaaagaccggttt
atcgagcggtacctggaaaaaaataaacacgaagccggcattatatatacagcgacaaga
aaagaaaccgaccgtttatatgataaattaaaacgcagcggcatcaatgccggccgttat
cacggcggattggcggatgatgacagaaaagaccagcaggagcggtttcttaacgatcag
atacaagtgatggtagctacgtccgctttcggaatgggaatcgataagagcaacatcaga
ttcgttttgcacgcgcagattccgaaagatatggagagctattaccaagaagccggacgg
gccgggcgcgatggtcttaacagcgagtgtgtgctcttgttttcgccgcaggatattatg
gtgcagcgttttttaatagaccaatcggccgccggagaagaaaaacaaaagcaggatctc
aaaaaactgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagaatgaggcggaagcttgcggagcatgcggcaattgcactgat
acaaggaccgcccatgacgtcacaaaagaagcgcagatggtattgtcatgcatcatcaga
atgaatgagcgcttcggaaaaacgatggtggcgcaggtgcttagcgggtcaaaaaataaa
aaagtgctggaaaacggcttcagcagcctgtccacttacggcattatgaagcatcaatcc
gcagcggaaatcagtgattttatcgaattccttatttcagatgaatatatcagaatggcg
gacggcacatttccgacgcttatggtcacccaaaaaggcagggatgttttgcttggaaaa
agcgcagtcgcgagaaaagaagccttacaggccgccgccgttaccgaaaatgatgaatta
tttgagcttctccggcgtctccgcaaagagattgcagctgaacagggcgtgcctccattt
gtcgtgttctcagatcagacgttaaaagaaatgtcggcgaaacttccgaaaacagatcag
gatcttctttccgtaaaaggggtcggggaacaaaaaagattgaaatacggagcggttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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