Bacillus amyloliquefaciens CC178: U471_21870
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Entry
U471_21870 CDS
T02893
Name
(GenBank) recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U471_21870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamc03019
]
U471_21870
03400 DNA repair and recombination proteins [BR:
bamc03400
]
U471_21870
Enzymes [BR:
bamc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U471_21870
Messenger RNA biogenesis [BR:
bamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U471_21870
DNA repair and recombination proteins [BR:
bamc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U471_21870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
PreAtp-grasp
Motif
Other DBs
NCBI-ProteinID:
AGZ56885
LinkDB
All DBs
Position
complement(2209362..2210852)
Genome browser
AA seq
496 aa
AA seq
DB search
MTELHKALSKYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVL
IISPLLSLMEDQVQQLKAKGEKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPY
VLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQALGKPPVLALTATATKETLR
DVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRF
VIHFYPPQTAEAFMQEIGRAGRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILA
IIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTTKEQLQEELTYRVEKKLRKMN
RFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgactgagctgcataaagctttatccaagtattttggtttgcattcctttaaaaaaggg
caggaagagattatgactagcgtgctccaaaaaaaggatacgatcgccatgcttccgacc
ggcgggggaaaatcattatgctatcagctcccgggttacatgatggacgggctggtgctg
attatttcgccgctcctttcattaatggaagatcaggtgcagcagctgaaagcgaaagga
gaaaagcgggttgcggcattaaacagcatgctgaattccgcagagcggcattttatcctc
agcaacatcagccggtataaatttctctatatgtctcctgaagccctttcttcaccttat
gtgctgaaccgtttgaaaaatgtcccggtcagtttatttgttattgatgaggctcattgc
atatcagaatggggacatgatttcaggcctgattactcgaagctcggacctttcaggcag
gcactcggaaagccgcctgtattggcgctgaccgcaacagcgacaaaagaaacgctcaga
gacgtgacggatgtgctcggacttgagcatgcggtgcgtcatctttattcagtcaaccgg
ccgaatattctcctggcggcagaacatttggcggataatgccgaaaaaataagcaggctc
acggagcttgccgaaaagcttgaaggcccgggtatcatatattgtccgaccagaaaatgg
gcggaagagcttgcggctgagctgaacgaaaaaacgggaaagcggacggattattatcac
ggcggaatggatacaggcgacaggattttaatccagcagcaatttatccataaccagctt
gattgcatctgctgcaccaatgcgttcggcatgggtgtggataagtcagatatccgcttt
gtcattcacttttatcctccccaaacggccgaggcctttatgcaggaaatcggcagagcg
ggacgcgacggcagcccgagtgtcagtattttgctgagggcgcccggcgataccgagctt
cagcagcagattattcagacagaaagcctgtctgattatgacctggaaggcattttggct
atcatacgggatgccggtacgggtgatgaacgaaagcttcgggacgttctgatcaataaa
ggcgtccaggaaacacaggcgcgaacggccgtccatctgtatctgcaaggaaaaaccaca
aaagagcagctgcaggaagaactgacataccgcgtggaaaagaagctgcgtaaaatgaat
cgtttttcggcgttattagagcggaaagaatgtataagagaagcgctgctgtcttatttt
gatgaaccgtatgagcctgatggtcaaaccggacaatgctgcagcagctgcggacttgat
ctggctccgtacgagcaaaaaggagaacgtaaaaatatggaacggtttgaagattggaag
ctggaattaggccggattttcggatcagagtctgcgggtgagttcagctga
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