Bacillus amyloliquefaciens CC178: U471_24330
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Entry
U471_24330 CDS
T02893
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
U471_24330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bamc03021
]
U471_24330
Transcription machinery [BR:
bamc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
U471_24330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF2316
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AGZ57131
LinkDB
All DBs
Position
complement(2466815..2467936)
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AA seq
373 aa
AA seq
DB search
MADKQTHETETELTLDQVKEQLTETGKKRGVLTYEEIAERMSSFEIESDQMDEYYEFLGE
QGVELISENEETEDPNIQQLAKAEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVNLLSAK
EEITYAQKIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKF
DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPT
PEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL
LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSKRLKDFLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaacaaacccacgaaacagaaacagaacttacattagaccaggtaaaagag
cagcttactgaaactggaaaaaaacgtggcgttttaacatatgaagaaattgctgaacgc
atgtccagctttgaaattgaatcagaccaaatggatgagtattatgaatttttaggagaa
caaggtgttgaattaattagtgaaaatgaagaaacggaagatcctaatattcaacagctt
gccaaagccgaagaagaatttgaccttaatgacctcagcgtaccgcctggcgtaaagatc
aatgatccagtccgcatgtaccttaaggaaatcggacgggtaaatcttctttctgctaaa
gaagaaatcacctacgctcaaaaaattgaagagggtgacgaggaatctaaacgcagactg
gctgaagcaaaccttcgtttagttgtcagcattgctaaacggtatgtcggccgcggcatg
cttttcttagacttgatccaagaaggaaacatgggtctcatgaaagccgtcgagaagttt
gactaccgtaaaggatataaattcagtacgtatgcgacttggtggatcagacaggcgatt
acacgcgccatcgctgaccaggcgagaacaatccgtatcccggttcacatggtggaaacc
atcaacaaattaatccgggtgcagcgtcagcttcttcaggatcttggcagagagccgaca
ccggaagagattgctgaagacatggatcttacacctgaaaaagtccgtgaaatattaaaa
attgctcaagagcctgtttctttagaaacgccgatcggtgaagaagacgactcacatctc
ggtgacttcatcgaagaccaggaagcgacatctccgtcggatcatgcggcatatgagctt
ttaaaagaacagctggaagatgtgctggatacgttgacagatcgtgaagaaaacgtgctg
cgtctccgtttcggtctggatgacggacgcacaagaactttggaagaagtaggcaaagtg
tttggagtaacgagagagcgtattcgccaaattgaagcaaaagcgcttcgcaaattgaga
catccgagcagaagcaaacgtctgaaggattttctcgaatag
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