Bacillus amyloliquefaciens CC178: U471_32050
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Entry
U471_32050 CDS
T02893
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bamc
Bacillus amyloliquefaciens CC178
Pathway
bamc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U471_32050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamc03019
]
U471_32050
03016 Transfer RNA biogenesis [BR:
bamc03016
]
U471_32050
Enzymes [BR:
bamc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
U471_32050
Messenger RNA biogenesis [BR:
bamc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U471_32050
Transfer RNA biogenesis [BR:
bamc03016
]
Prokaryotic type
tRNA degradation factors
U471_32050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
AGZ57903
LinkDB
All DBs
Position
complement(3202049..3204382)
Genome browser
AA seq
777 aa
AA seq
DB search
MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEADEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctcgcgtttatgaaggaagaggcgtacaag
ccccttaccgttcaggaacttgaggagatgctgaacatcacggaagcagatgaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggacagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgca
aagggattcgcgtttctattgccggaggatacctctttaagcgatgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggtgcggctcaattcccagtca
agcggatcgagacaggaaggcacggtcatccgcatcttggaaagaagcatcgaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggttttgtcatcccggatgataagaaaatc
acgagtgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtcaaactgacaagctaccctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgatccgggcatcgatattttatcaattatccataagcacggc
ctgccgggagattttccggctgaagcgatggagcaggcaacaagcacgccggataccatc
gatgaaaaagacatcaaagaccgccgtgatctccgcgatcaggtcattgtcaccattgac
ggcgcggatgcgaaggatctggatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgacgtcagccattacgtcacggagaattccccgatt
gacaaagaagcgctggaaagagggacaagcgtgtacttggttgaccgggtcattccgatg
attccgcacagactgtctaacggaatctgttctttaaatccgaaggtcgaccgcctgacg
ctttcctgcgaaatgacaatcaaccagcagggccaggtgacagagcacgagatcttccaa
agcgtcattaaaacgacggaaagaatgacctattcagatgtcaaccggatcctcacagaa
gacgacgccgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgtctggcggaaattctccgggcgaaacggatggaccgcggcgccgtggattttgatttc
aaagaggcgaaagtgctcgtcgatgaggaaggcgccgtaaaagacgtcgtcatcagagag
cgctcagtagcggaaaagctgattgaagaattcatgcttgtcgcaaacgaaacggtggcc
gagcacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgcc
gaaaaactgcaaaagttcctggagttcgtcacgacattcggttatatcgttaaaggaaaa
gccggagacattcatccgcgcgcgctgcaaagcattcttgatgaagtgcgggaccgtccg
gaagaaacggtgatttcaaccgtcatgctccgttccatgaagcaggcgaaatacgacccg
caaagcctgggccatttcgggctggcgactgaattttatacgcacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacaggctgatcagaacgtatttgatcaacggacaa
tcggacgaagcgactcaagaaaagtgggccgaacgccttccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgatgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggaatttgacggcatgatcagttccgtcacgaat
ttcggaatgtttgtcgagctgccgaatacgattgaaggtcttgtgcacgtcagctttatg
acggatgattattaccgttttgacgagcagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggagatgaaatcacggtcaaagtcgtcgacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacgaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgcgtgttaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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