Bacillus amyloliquefaciens LFB112: U722_10335
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Entry
U722_10335 CDS
T02965
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bamf
Bacillus amyloliquefaciens LFB112
Pathway
bamf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U722_10335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamf03019
]
U722_10335
03400 DNA repair and recombination proteins [BR:
bamf03400
]
U722_10335
Enzymes [BR:
bamf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U722_10335
Messenger RNA biogenesis [BR:
bamf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U722_10335
DNA repair and recombination proteins [BR:
bamf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U722_10335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHC42480
LinkDB
All DBs
Position
complement(2093267..2095045)
Genome browser
AA seq
592 aa
AA seq
DB search
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLT
SSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGRLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDQDLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggataaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagaggagagaaaaaacacggtctgcattatg
ccgacggggggcggaaaatcaatctgctatcagattcccgcactgctgtttgaaggaacc
acaatcgttatttcccctcttatttccttaatgaaagatcaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcacccagacaagccgtgacattcatgagcgc
ctgaccggtttgaaacaaggggcttaccggctcttttacatcacaccggagcgtttgact
tcttcagaattcattcatatcctgcagaatattacggttcctcttgtcgccattgacgaa
gctcactgtatatcgcaatggggacatgatttcaggccgagttaccggaatatcgaaatc
ctttttaatgaattaaaagaaccgcccgtcatcatcgcattaacggcgacggctacgcct
gaggttcatgatgacatctgcaagcagcttcatattaagaaagaacaaactgtatatacc
ggttttgccagagagaatttaacgtttaaagtagtaaagggcgaaaacaaagaccggttt
atcgagcggtacctcgaaaaaaataaacacgaagccggcattatatatacagcgacaaga
aaagaaaccgaccgtttatatgagaaattaaaacgcagcggcatcaatgccggccgttat
cacggcagattggcggatgacgacagaaaagaccagcaggagcggtttcttaatgatcag
atacaagtgatggtagctacgtccgctttcggaatgggaatcgataagagcaacatcagg
tttgttttacacgcgcagattccgaaagatatggagagctattaccaagaagccggacgg
gccgggcgcgatggtcttaacagcgagtgtgtgctcttattttcgccgcaggatattatg
gtgcagcgttttttaatagaccaatcggccgccggagaagaaaaacaaaagcaggatctc
aaaaagctgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagaatgaggcggaagcttgcgaagcgtgcggcaattgcactgat
acaaggaccgcccatgacgtcacaaaagaagcgcagatggtattgtcttgcatcatcaga
atgaatgagcgcttcggaaaaacgatggtggcgcaggtgcttagcgggtcaaaaaataaa
aaagtgctggaaaacggcttcagcagcctgtccacttacggcattatgaagcatcaatcc
gcagcggaaatcagtgattttatcgaatttcttatttcagatgaatatatcagaatggcg
gacggcacatttcccacgcttatggtcacccaaaaaggcagggacgttctgcttggaaaa
agcgcagtcgcgagaaaagaagccttacaggccgccgccgttaccgaaaatgatgaatta
tttgagcttctccggcgtctccgcaaagagattgcagctgaacagggtgtgcctccattt
gtcgtgttctcagaccagacgttaaaagaaatgtcggcgaaacttccgaaaacagatcag
gatcttctttccgtaaaaggggtcggggaacaaaaaagattgaaatacggagcggttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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