Bacillus amyloliquefaciens LFB112: U722_11555
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Entry
U722_11555 CDS
T02965
Name
(GenBank) ATP-dependent DNA helicase RecS
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bamf
Bacillus amyloliquefaciens LFB112
Pathway
bamf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U722_11555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamf03019
]
U722_11555
03400 DNA repair and recombination proteins [BR:
bamf03400
]
U722_11555
Enzymes [BR:
bamf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
U722_11555
Messenger RNA biogenesis [BR:
bamf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U722_11555
DNA repair and recombination proteins [BR:
bamf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
U722_11555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
PreAtp-grasp
Motif
Other DBs
NCBI-ProteinID:
AHC42702
LinkDB
All DBs
Position
complement(2290300..2291790)
Genome browser
AA seq
496 aa
AA seq
DB search
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVL
IISPLLSLMEDQVQQLKAKGEKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPY
VLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQALGKPPVLALTATATKETLR
DVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKINRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRF
VIHFYPPQTAEAFMQEIGRAGRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILA
VIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTTKEQLQEELTYRVEKKLRKMN
RFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgactgagctgcataaagctttatccagatattttggtttgcattcctttaaaaaaggg
caggaagagattatgactagcgtgctccaaaaaaaggatacgatcgccatgcttccgacc
ggcggggggaaatcattatgctatcagctcccgggttacatgatggacgggctggtgctg
attatttcaccgcttctttcattaatggaagatcaggtgcagcagctgaaagcaaaagga
gaaaagcgggttgcggcattaaacagcatgctgaattccgcagagcggcattttattctc
agcaacatcagccggtataaatttctctatatgtctcctgaagccctttcttcaccttat
gtactgaaccgtttgaaaaacgttccggtcagtttatttgttattgatgaggctcattgc
atatcggaatggggacatgatttcaggcctgattattcgaagctcgggcctttcagacag
gcactcggaaagccgcctgtattggcgctgactgcaacagcgacaaaagaaacgctcaga
gacgtgacggatgtgctcggacttgagcatgcggtgcgtcatctttattcagtcaaccgg
ccgaatattctcctggcggcagaacatttggctgataatgccgaaaaaataaacaggctc
acggagcttgccgaaaagcttgaaggccccggtatcatatattgtccgaccagaaaatgg
gcggaagagcttgcggctgagctgaatgaaaaaacgggaaagcggacggattattatcac
ggcggaatggatacaggggacagaatcttgatccagcagcaatttatccataaccagctt
gattgcatctgctgtaccaatgcgttcggcatgggtgtggataagtcagatatccgcttt
gtcattcacttttatcctccccaaacggctgaggcctttatgcaggaaatcggcagagcg
ggacgcgacggcagcccgagtgtcagtattttgctgagggcgcccggcgataccgagctt
cagcagcagattattcagacagaaagcctgtctgattatgatctggaaggcattttggcc
gtcatacgggatgccggtacggatgatgagcgaaagcttcgggacgttctgatcaataaa
ggcgtccaggaaacacaggcgcgaacggccgtccatctgtatctgcaaggaaaaaccaca
aaagagcagctgcaggaagaactgacataccgcgtggaaaagaagctgcgtaaaatgaac
cgtttttcggcgttattagagcggaaagaatgtataagaaaagcgctgctgtcttatttt
gatgaatcgtatgagcctgaaggccaaaccggacaatgctgcagcagctgcggacttgat
ctggctccgtacgagcaaaaaggagaacggaaaaacatggaacggtttgaagattggaag
ctggaattaggccggattttcggttcagagtctgcgggtgagttcagctga
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