Bacillus amyloliquefaciens LFB112: U722_14250
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Entry
U722_14250 CDS
T02965
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bamf
Bacillus amyloliquefaciens LFB112
Pathway
bamf03030
DNA replication
bamf03430
Mismatch repair
bamf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bamf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
U722_14250 (dnaE)
03430 Mismatch repair
U722_14250 (dnaE)
03440 Homologous recombination
U722_14250 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bamf03032
]
U722_14250 (dnaE)
03400 DNA repair and recombination proteins [BR:
bamf03400
]
U722_14250 (dnaE)
Enzymes [BR:
bamf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
U722_14250 (dnaE)
DNA replication proteins [BR:
bamf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
U722_14250 (dnaE)
DNA repair and recombination proteins [BR:
bamf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
U722_14250 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AHC43228
LinkDB
All DBs
Position
complement(2829806..2833144)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIK
PIIGLTASIYTDDTELEAHPLILLAETNTGYQNLVKISSALQSMAKGGMKRKWMKSYHEG
LIAITPGENGYIESLLQAGKFEEAVRAAEGFRELFGDGRFYLGYQPFKGHETLSEEILRL
SAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGNLPDLYLRTPEEMAELYT
RHPEAVEAAARIARQCRVDVSLGQTQLPSFPAPDGKSADDYLAEICHEGLRLRFGTPDER
AVRRLEYELDVIRRMKFSDYFLIVWDFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVD
PLKHSLLFERFLNPERISMPDIDIDFPDTRRDEVIQYVQNKYGAMHVAQIITFGTLAAKA
ALRDTGRVFGISPKEADQLARLIPSKPGMTLEEARRQSAQLNRRLSESAVLHKVFQIARK
IEGLPRHTSTHAAGVVLSKEPLSEVVPLQEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRN
LTLIESIKTMIEKETNTKIDFSEISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKP
SRLEDIVAVNALYRPGPMENIPLFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMM
IASRMAGFSLGEADLLRRAVSKKQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFA
NYGFNRSHAVAYSMIGYQLAYLKAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGIQVL
PPSINKSGFPFAPENGAVRYSLRAVKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSV
NRKTIEALIFSGAMDEFNQNRAALLASVDVALEHAELFRADDDQMGLFLEESFSIKPKYV
EAEEFPLVDKLRFEKEALGVYFSSHPLSAFRDLLKKRGAQTITAARQMPKGQLSIGALLA
GIKTIRTKTGQHMAFLTLSDETGEMEAVVFPDQYRRLSPLLKEGALLFAAGKMEERQEKT
QFIMSSASLLEQTEADRAPSVYIKIEGSRHNQEFLEKMKRILLEHKGETGVYLYYEKDKQ
TIRLPDTFHIQADHQALYRLKELLGRENVVLK
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttttgttcacctgcaagtacatagcggctacagcctgttaaacagcgccgcttct
gtaaaagagcttgttacacaagcgaaggaactcggatattcatcattggcgctgaccgac
gaaaatgtgatgtacggcgccattgagttttataaagcatgcaaatcaaacggaattaag
ccgattatcggtctgacggcttctatatacacggacgatacggagcttgaagcacacccg
ctcattcttttagcggagacaaacaccggttatcagaacctggtgaaaatctcaagtgcg
ctgcaatccatggcaaagggcggcatgaagcgaaaatggatgaagagctatcatgagggg
ctgatcgccattacgcccggtgaaaacgggtacattgaaagcctgcttcaagccgggaag
tttgaagaagcggtccgggctgccgaaggattccgggagctgttcggagacggccgtttt
tatttagggtaccagccgtttaaaggacatgagacgttatcagaagagattctccgcctg
tcagccgagacggaaatcgctgtctgcgctgcgggggatgtccgctatatcaagaaagaa
gatcaagatgcgtaccgctgtctgtgcgctattaaagccggagagaaatgggaggatcag
agcgggaatctgccggacttatacttgaggacgcctgaagaaatggcagagctttacacg
cggcatccggaagcggttgaagcagccgcccgtatcgcccggcaatgccgggtcgatgtc
agcctcggacagacacagcttccgtcttttccggcgccggacggcaaatcagccgatgac
tatttggcggagatctgtcatgaggggctgcgtctccgtttcggcactcctgatgagcgg
gctgtccgccggcttgaatatgagctggacgtcatcaggcgcatgaaattcagtgattat
tttctcatcgtatgggactttatgaagtacgcgcatgaaaagggcattgtgacaggcccg
ggaagggggtccgcggcaggctcgcttgtcgcttactcgcttttcattaccgacgtggat
ccgcttaaacattctctgctgtttgagagatttcttaatcccgagcggatcagcatgccg
gatattgatatcgatttccctgatacgagaagggatgaggtcattcagtatgtgcaaaat
aagtacggggccatgcacgtcgcccagattatcaccttcgggacattggccgcaaaggcg
gcgttaagggataccgggagagtgttcggaatcagcccgaaagaagccgaccagcttgcc
cgcctgatcccgtcgaaaccgggaatgacgcttgaggaggcaaggcggcagtccgctcag
ctgaacaggcggctgtccgaatccgccgttcttcataaagtgtttcagatcgcaaggaaa
atcgaaggtcttccgagacacacgtcaacacacgcggccggggtcgttctcagtaaagag
ccgctttcggaagttgtccctcttcaagaagggcatgacggcgtgtatttaacgcagtat
gcgatggatcacctggaagatctcggtcttttgaaaatggactttttaggtttgcgcaac
ctgacgcttattgaatccattaaaacgatgattgaaaaagagacgaatacgaaaattgat
ttttccgagatttcttatcaggatgaaaaaacgttctcgctattgtcaaacggtgatacg
acgggtattttccagctggaatcatcagggatgagaaacgtgctgaagcgcctgaagccg
tcaagactggaagacattgtcgcggttaacgcgctttacaggccgggaccgatggaaaat
attccgttatttatcgatcggaagcacggacgggcgcgtgtggaagtgccgcacgaggac
gtaagaaatattctcagtgacacttacggcgtcatcgtctatcaagaacagataatgatg
atcgcctcgcgcatggcagggttttcattaggtgaagcggatctgctcagacgggctgtc
agcaaaaagcaaaaggacattctggacagagagcgaagccattttgttgaagggtgctta
aaaaaggagtattctgtagtcactgcaaacgaggtctacgatctgattgtaaaattcgct
aactacggattcaacagaagccatgctgtcgcatacagcatgatcggctatcagctcgcc
tatttaaaggcgcattatccgctatattttatgtgcgggctgttgacgagcgtcatcggc
aatgaggacaaaatatcgcaatatctgcatgaagcgaaggggagcgggattcaagtcctt
ccgccgtcaataaacaaaagcggttttccgtttgcgccggaaaacggagccgtcagatac
agtttgcgggccgttaaaaacgtaggcgtctcggcagtgaaagatatttataaagcaaga
acacataaaccgttcgaggatcttttcgatttctgctttcgcgtacctgcaaaaagcgtg
aatcggaaaaccatcgaagcccttatattttctggcgccatggacgaattcaatcaaaat
cgcgccgccttgctggcctccgttgatgtggctttagagcacgctgaactttttcgtgca
gacgatgaccaaatgggattgtttttggaagaatcgttttccattaagccaaaatatgta
gaggctgaggaatttccgctcgtggacaagcttcggttcgaaaaagaagctctcggtgtt
tatttctcaagccatcctttgtctgctttcagggatctcctgaaaaaacggggggcgcaa
acgatcacagcagcgcggcagatgccgaagggacagctgtcaatcggcgctttgctcgcg
ggcattaaaacgattcggacaaagacaggtcagcatatggcgtttctcacattaagcgat
gaaacgggagaaatggaagccgtcgtgtttcctgaccaatatagaaggctgtctccgctg
ttaaaagaaggcgcgcttttattcgccgccggaaaaatggaagagcgtcaggagaagaca
caattcatcatgtcatccgcctctcttcttgaacagacggaggcagacagagcgccgtct
gtttacatcaaaatcgaaggcagccggcacaatcaggagtttttggaaaagatgaagcgt
attttactggagcataaaggggaaaccggcgtttatctatattatgaaaaagacaagcag
acgatcaggctgccggatacttttcatattcaggcggaccatcaggcgttataccgttta
aaagagctgctgggccgcgaaaacgtcgtgttaaaatag
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