Bacillus amyloliquefaciens IT-45: KSO_000960
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Entry
KSO_000960 CDS
T02462
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSO_000960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bami03019
]
KSO_000960
03009 Ribosome biogenesis [BR:
bami03009
]
KSO_000960
Enzymes [BR:
bami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSO_000960
Messenger RNA biogenesis [BR:
bami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSO_000960
Ribosome biogenesis [BR:
bami03009
]
Prokaryotic type
rRNA helicases
KSO_000960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
SWI2_SNF2
UvrD-helicase
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGF25698
LinkDB
All DBs
Position
181187..182626
Genome browser
AA seq
479 aa
AA seq
DB search
MNEFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI
CELAEWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQK
SHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTML
FSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKSSLLRDVLITENP
DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVA
ARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAVTFVTPSESRFLNDIETYIG
FRIQKREAPSEKETAERKAAFAEKLNARPDVKTDKSEQLNKDIMKLYFNGGKKKKLRAVD
FVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLDIMKNATVKGKKLKVHKAKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtttaatgaatatgcgatcagccccgagatccgacgggcgctgaatggcttg
caatacaccgagccgactgaagtgcagcggcgcgtcatccccgccgcgctgcaaaaaaaa
gacctcgttgtcaaatcgcagacgggtagcggcaaaaccgcagctttcggcattccgatc
tgcgagcttgcggaatgggaggaaaacaaaccgcaggcgctgattttaacgccgacccgc
gagcttgcggcgcagattaaagaagatatcacgaatatcggccgtttcaaacggataaaa
gccacggcggttttcggaaaagcttcttttgacaaacagaaaaccgaactgaagcaaaaa
agccacgtcgttgccggaacgccgggacgtgtgcttgatcacatagaaaaagggacgctg
ccgcttgaacggctggcgtatgtggtgattgacgaagcggatgaaatgctgaatatggga
tttattgaacaggtggaagccatcattcagcatctgccgaaaaacagagtcaccatgttg
ttttcagcgacgctgccggatgacgtcgagaagctgagccgcacatatatgaaagaccct
gaattgattgaagtaaaagcggaaggcctgacgacaaaagacattgagcattttgtcacc
agaacagaagaagaggataaatcatctttgctgcgtgatgtcctgatcaccgaaaacccg
gacagctgcatcatattctgccggacaaaagaaagagttatccagttaaccgatgagctg
gacaggctgggctacccttgcgataaaattcacggcggaatggtgcaggaagaccgcttt
gacgtcatgaatgaattcaagcgcggcgagttccgctatctcattgcgaccgacgttgcc
gccagaggaattgatatcgaaaacatcagcctcgtcatcaattatgatattccgcttgaa
aaagaaagctatgtgcaccgcacaggcagaacgggccgcgccggacaccgcggacgggcc
gttacgtttgtgacgccttctgaatcgcggttcctgaatgacattgagacatatatcggt
ttccgcatccaaaagcgggaggcgccgtccgagaaagaaacagcggaacggaaagcggct
tttgcggaaaaattgaacgcccgccccgatgtcaaaacagacaaaagcgaacagttaaac
aaagacatcatgaagctgtactttaacggcgggaaaaagaaaaaactcagagcggtcgat
tttgtcgggacgatcgcgaaaatcgacggcgtttcagccgatgatatcgggattatcacg
attctggacaacgcatcgtacgtcgaaattctgaacggaaaaggcccgcacgttcttgat
atcatgaaaaatgcgacggtcaaaggcaaaaaactgaaagtccataaagccaagaaataa
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