Bacillus amyloliquefaciens IT-45: KSO_002940
Help
Entry
KSO_002940 CDS
T02462
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSO_002940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_002940
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSO_002940
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KSO_002940
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
CDT1
DUF87
AAA_30
AAA
AAA_22
AAA_7
AAA_16
AAA_19
AAA_25
P-loop_SecA
AAA_5
TrwB_AAD_bind
UFL1
HEM4
UB2H
AAA_6
EAD4
Motif
Other DBs
NCBI-ProteinID:
AGF26085
LinkDB
All DBs
Position
554623..556608
Genome browser
AA seq
661 aa
AA seq
DB search
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPT
LVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEID
KLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVSLRPEMEIERNELLRKLVDIQ
YARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREM
GFCSGIENYSRHLTLRPPGSTPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQV
LVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYEIEHTPEMIEQIIRPTGLLDP
LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNAEGRVIMYADKITNSMEIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQ
AAEDKEEYKTKAAPKLAKMTKKERQKVVEQMEHEMKEAARALDFERAAELRDLLLELKAE
G
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatcgttttgagttagtctcgaaatatcagccccagggagatcagccgcaagcg
attgagaagcttgtcaaaggtatacaggaaggcagaaaacaccagactctcctgggtgcg
acagggacgggcaaaacctttaccgtgtccaatctgattaaagaagtgaacaaaccgaca
ctggtcattgcccataacaaaacccttgccggacagctgtacagcgagtttaaggagttt
ttcccgaacaacgctgtcgagtattttgtcagctattacgattactatcagccggaggcg
tacgtgcctcaaacggatacttttatagagaaagacgcaagcattaatgatgaaattgat
aagctgagacactccgcgacatcctctctgtttgaacggagagatgtcatcattatcgcg
agtgtgtcatgcatatacggcctcggttcgcctgaagaataccgggaaatggtcgtgtcg
ctcagaccggaaatggagattgagcggaacgagctgctgagaaagcttgtggatatccag
tatgcccgcaatgatatcgactttcagcgcgggacgttccgcgtgcgcggcgacgttgtg
gaaatctttccggcttcccgtgacgaacattgtatcagagtggaatttttcggagacgaa
attgagcggatcagagaggtcgacgctttgaccggagaaatactcggcgaccgtgatcat
gtcgcgattttcccggcttcccacttcgtcacccgggcggaaaagatggaaaaagcgatt
ctgaatattgaacaggagcttgaggagcgcttgaaagtgatgcgcgaaaacggcaagctc
cttgaagcgcagcggcttgagcagcggacgaggtatgatcttgaaatgatgcgggaaatg
ggtttttgctcagggatcgagaactattcaagacatttgacgctccgtccgccgggctct
acgccgtatacgctgcttgattattttccggacgattttatgattgtcgttgatgaatca
catgtgacgattccgcaggtgcgcggcatgttcaacggtgaccaggcgagaaaacaggtg
cttgtcgatcacgggttccgcctcccgtcagcgcttgacaaccgtccgctccgattcgag
gaatttgaaaagcatatgcacaatatcgtgtacgtgtcggcgactccgggaccgtatgaa
attgagcatacgccggaaatgatcgagcagatcatcagaccgacgggactcctcgatccc
ctcattgacgtccgtccgatcgaaggacagattgatgatctgatcggcgagattcaggcg
aggattgaacggaatgaacgcgttctcgtgacgactctgacgaaaaaaatgtcagaggat
ctgaccgattatctcaaggaaatcggcatcaaggtcaattatctgcattccgagattaag
acgcttgaacggattgaaatcatccgtgacctccggctcggaaaacatgatgtgttaatc
ggcatcaacctgctgagggaagggcttgatattccggaagtgtcacttgtcgccattctc
gatgcggataaagaaggcttcctccgttctgaacgttcgctgattcagacgatcggacgg
gcggcacgaaacgcggaaggccgcgtcatcatgtatgccgataaaatcacgaattcgatg
gagatcgcaattaatgaaacgaagcgccgacgggaacagcaggagcgctttaacgaaatt
cacggcattacgccgcaaacgatcaataaggaaatccgcgatgtgatccgcgcgacgcag
gccgctgaggataaagaagaatataaaacaaaagccgcgcctaaactggcaaagatgacg
aagaaagaacgccagaaagtcgttgagcaaatggagcacgaaatgaaagaagcggccaga
gcgcttgatttcgagcgggcggcagagcttcgtgatttactgttagagcttaaagcggaa
ggatga
DBGET
integrated database retrieval system
