Bacillus amyloliquefaciens IT-45: KSO_005890
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Entry
KSO_005890 CDS
T02462
Symbol
dnaE
Name
(GenBank) DNA polymerase III DnaE
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03030
DNA replication
bami03430
Mismatch repair
bami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSO_005890 (dnaE)
03430 Mismatch repair
KSO_005890 (dnaE)
03440 Homologous recombination
KSO_005890 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bami03032
]
KSO_005890 (dnaE)
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_005890 (dnaE)
Enzymes [BR:
bami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KSO_005890 (dnaE)
DNA replication proteins [BR:
bami03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KSO_005890 (dnaE)
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KSO_005890 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGF26675
LinkDB
All DBs
Position
1124801..1128139
Genome browser
AA seq
1112 aa
AA seq
DB search
MSFVHLQVHSGYSLLNSAASVKELVTQAKELGYSSLALTDENVMYGAIEFYKACKSNGIK
PIIGLTASIYTDDTELEAHPLILLAETNTGYQNLVKISSALQSMAKGGMKRKWMKSYHEG
LIAITPGENGYIESLLQAGKFEEAVRAAEGFRELFGDGRFYLGYQPFKGHETLSEEILRL
SAETEIAVCAAGDVRYIKKEDQDAYRCLCAIKAGEKWEDQSGNLPDLYLRTPEEMAELYT
RHPEAIEAAARIARQCRVDVSLGQTQLPSFPAPDGKSADDYLAEICHEGLRLRFGTPDER
AVRRLEYELDVIRRMKFSDYFLIVWDFMKYAHEKGIVTGPGRGSAAGSLVAYSLFITDVD
PLKHSLLFERFLNPERISMPDIDIDFPDTRRDEVIQYVQNKYGAMHVAQIITFGTLAAKA
ALRDTGRVFGISPKEADQLARLIPSKPGMTLEEARRQSAQLNRRLSESAVLHKVFQIARK
IEGLPRHTSTHAAGVVLSKEPLSEVVPLQEGHDGVYLTQYAMDHLEDLGLLKMDFLGLRN
LTLIESIKTMIEKETNTKIDFSEISYQDEKTFSLLSNGDTTGIFQLESSGMRNVLKRLKP
SRLEDIVAVNALYRPGPMENIPLFIDRKHGRARVEVPHEDVRNILSDTYGVIVYQEQIMM
IASRMAGFSLGEADLLRRAVSKKQKDILDRERSHFVEGCLKKEYSVVTANEVYDLIVKFA
NYGFNRSHAVAYSMIGYQLAYLKAHYPLYFMCGLLTSVIGNEDKISQYLHEAKGSGIQVL
PPSINKSGFPFAPENGAVRYSLRAVKNVGVSAVKDIYKARTHKPFEDLFDFCFRVPAKSV
NRKTIEALIFSGAMDEFNQNRAALLASVDVALEHAELFRADDDQMGLFLEESFSIKPKYV
EAEEFPLVDKLRFEKEALGVYFSSHPLSAFRDLLKKRGAQTITAARQMPKGQLSIGALLA
GIKTIRTKTGQHMAFLTLSDETGEMEAVVFPDQYRRLSPLLKEGALLFAAGKMEERQEKT
QFIMSSASLLEQTETDRAPSVYIKIEGSRHNQEFLEKMKRILLEHKGETGVYLYYEKDKQ
TIRLPDTFHIQADHQALYRLKELLGRENVVLK
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttttgttcacctgcaagtacatagcggctacagcctgttaaacagcgccgcttct
gtaaaagagcttgttacacaagcgaaggaactcggatattcatcattggcgctgacggac
gaaaatgtgatgtacggcgccattgagttttataaagcatgcaaatcaaacggaattaag
ccgattatcggtctgacggcttctatatacacggacgatacggagcttgaagcacacccg
ctcattcttttagcggagacaaacaccggttatcagaacctggtgaaaatctcaagtgcg
ctgcaatccatggcaaagggcggcatgaagcgaaaatggatgaagagctatcatgagggg
ctgatcgccattacgcccggtgaaaacgggtacattgaaagcctgcttcaagccgggaag
tttgaagaagcggtccgggctgccgaaggattccgggagctgttcggagacggccgtttt
tatttagggtaccagccgtttaaaggacatgagacgttatcagaagagattctccgcctg
tcagccgagacggaaatcgctgtctgcgctgcgggagatgtccgctatatcaagaaagaa
gatcaagatgcgtaccgctgtctgtgcgctattaaagccggagagaaatgggaggatcag
agcgggaatctgccggacttatacttgaggacgcctgaagaaatggcagagctttacacg
cggcatccggaagcgattgaagcggccgcccgtatcgcccggcaatgccgggtcgatgtc
agcctcggacagacacagcttccgtcttttccggcgccggacggcaaatcagccgatgac
tatttggcggagatctgtcatgaggggctgcgtctccgtttcggcactcctgatgagcgg
gctgtccgccggcttgaatatgagctggacgtcatcaggcgcatgaaattcagtgattat
tttctcatcgtatgggactttatgaagtacgcgcatgaaaagggcattgtgacaggcccg
ggaagggggtccgcggcaggctcgcttgtcgcttactcgcttttcattaccgacgtggat
ccgcttaaacattctctgctgtttgagagatttcttaatcccgagcggatcagcatgccg
gatattgatatcgatttccctgatacgagaagggatgaggtcattcagtatgtacaaaat
aagtacggggccatgcacgtcgcccagattatcaccttcgggacattggccgcaaaggcg
gcgttaagggataccgggagagtgttcggaatcagcccgaaagaagccgaccagcttgcc
cgcctgatcccgtcgaaaccgggaatgacgcttgaggaggcgaggcggcagtccgctcag
ctgaacaggcggctgtccgaatccgccgttcttcataaagtgtttcagatcgcaaggaaa
atcgaaggtcttccgagacacacgtcaacacacgcggccggggtcgttctcagtaaagag
ccgctttcggaagttgtccctcttcaagaagggcatgacggcgtgtatttaacgcagtat
gcgatggatcacctggaagatctcggtcttttgaaaatggactttttaggtttgcgcaac
ctgacgcttattgaatccattaaaacgatgattgaaaaagagacgaatacgaaaattgat
ttttccgagatttcttatcaggatgaaaaaacgttctcgctattgtcaaacggtgatacg
acgggtattttccagctggaatcatcaggaatgagaaacgtgctgaagcgcctgaagccg
tcaagactggaagacattgtcgcggttaacgcgctttacaggccgggaccgatggaaaat
attccgttatttatcgatcggaagcacggacgggcgcgtgtggaagtgccgcacgaggac
gtaagaaatattctcagtgacacttacggcgtcatcgtctatcaagaacagataatgatg
atcgcctcgcgcatggcagggttttcattaggtgaagcggatctgctcagacgggctgtc
agcaaaaagcaaaaggacattctggacagagagcgaagccattttgttgaagggtgctta
aaaaaggagtattctgtagtcactgcaaacgaggtctacgatctgattgtaaaattcgct
aactacggattcaacagaagccatgctgtcgcatacagcatgatcggctatcagctcgcc
tatttaaaggcgcattatccgctatattttatgtgcgggctgttgacgagcgtcatcggc
aatgaggacaaaatatcgcaatatctgcatgaagcgaaggggagcgggattcaagtcctt
ccgccgtcaataaacaaaagcggttttccgtttgcgccggaaaacggagccgtcagatac
agtttgcgggccgttaaaaacgtaggcgtctcggcagtgaaagatatttataaagcaaga
acacataaaccgttcgaggatcttttcgatttctgctttcgcgtacctgcaaaaagcgtg
aatcggaaaaccatcgaagcccttatattttctggcgccatggacgaattcaatcaaaat
cgcgccgccttgctggcctccgttgatgtggctttagagcacgctgaactttttcgtgca
gacgatgaccaaatgggattgtttttggaagaatcgttttccattaagccaaaatatgta
gaggctgaggaatttccgctcgtggacaagcttcggttcgaaaaagaagctctcggtgtt
tatttctcaagccatcctttgtctgctttcagggatctcctgaaaaaacggggggcgcaa
acgatcacagcagcgcggcagatgccgaagggacagctgtcaatcggcgctttgctcgcg
ggcattaaaacgattcggacaaagacaggtcagcatatggcgtttctcacattaagcgat
gaaacgggagaaatggaagccgtcgtgtttcctgaccaatatagaaggctgtctccgctg
ttaaaagaaggcgcgcttttattcgccgccggaaaaatggaagagcgtcaggagaagaca
caattcatcatgtcatccgcctctcttcttgaacagacggagacagacagagcgccgtct
gtttacatcaaaatcgaaggcagccggcacaatcaggagtttttggaaaagatgaagcgt
attttactggagcataaaggggaaaccggcgtttatctatattatgaaaaagacaagcag
acgatcaggctgccggatacttttcatattcaggcggaccatcaggcgttataccgttta
aaagagctgctgggccgcgaaaacgtcgtgttaaaatag
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