Bacillus amyloliquefaciens IT-45: KSO_005975
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Entry
KSO_005975 CDS
T02462
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KSO_005975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_005975
Enzymes [BR:
bami01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
KSO_005975
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KSO_005975
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KSO_005975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AGF26692
LinkDB
All DBs
Position
1147506..1148336
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AA seq
276 aa
AA seq
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MPELPEVETVRRTLTGLVKGKTIESADIRWPNIIKKPAEPEEFARQIAGETIRSIGRRGK
FLLFHLDHYVMVSHLRMEGKYGLHQADEPDDKHVHVVFHMTDGTQLRYRDVRKFGTMHLF
APGEERNALPLSQLGPEPDDEAFTAAYLKERLAKTNRAVKTALLDQKAVVGLGNIYVDEA
LFRARIHPETKANSLSDGQIKTLHTEIKDTLQEAIDAGGSTVRSYINSQGEIGMFQLKHY
VYGKKDEPCKTCGTMISKIVVGGRGTHFCARCQKKS
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaattaccagaagttgaaacggtccggcgcactctgaccggtcttgtgaagggg
aaaacgattgaatcggcggatatcagatggccgaatatcatcaaaaaacccgccgagccg
gaggaattcgcgcggcagattgcaggagaaacgatccgatccatcggaagaaggggaaag
tttttgcttttccatttggatcattatgtcatggtgtcccacctgcggatggaggggaaa
tacggtcttcatcaggccgatgagcctgacgataaacatgtgcacgtcgtgtttcacatg
acggacggaacacagctccgctaccgggatgtccggaaattcggaacgatgcatttgttt
gcgccgggagaggaacggaatgcattaccgctttcacagctcgggcccgaacccgatgat
gaagcatttaccgccgcttatttaaaagagcggcttgcaaaaacgaaccgcgcggtgaaa
accgccctgctcgaccaaaaagcggtcgtcggcctcggcaatatttatgtcgatgaagct
ttattccgggcgcgtattcatcctgagacaaaagcgaacagtctgtcggacgggcagata
aaaacgcttcatacagaaattaaagacacccttcaggaagcgattgacgcgggcgggagc
accgtccggtcttatatcaattctcaaggggagatcggaatgtttcagctcaaacattac
gtctacggcaaaaaggatgaaccgtgcaaaacgtgcggcacgatgatttctaaaatcgtg
gtcggcggaaggggcactcatttttgcgcccgctgccaaaaaaaatcataa
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