Bacillus amyloliquefaciens IT-45: KSO_009895
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Entry
KSO_009895 CDS
T02462
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSO_009895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bami03019
]
KSO_009895
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_009895
Enzymes [BR:
bami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSO_009895
Messenger RNA biogenesis [BR:
bami03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSO_009895
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KSO_009895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGF27474
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All DBs
Position
1887815..1889593
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AA seq
592 aa
AA seq
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MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLT
SSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDQDLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggataaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagaggagagaaaaaacacggtctgcattatg
ccgacggggggcggaaaatcaatctgctatcagattcccgcactgctgtttgaaggaacc
acaatcgttatttcccctcttatttccttaatgaaagatcaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcacccagacaagccgtgacattcatgagcgc
ctgaccggtttgaaacaaggggcttaccggctcttttacatcacaccggagcgtttgact
tcttcagaattcattcatatcctgcagaatattacggttcctcttgtcgccattgacgaa
gctcactgtatatcgcaatggggacatgatttcaggccgagttaccggaatatcgaaatc
ctttttaatgaattaaaagaaccgcccgtcatcatcgccttaacggcgacggctacgcct
gaggttcatgatgacatctgcaagcagcttcatattaagaaagaacaaactgtatatacc
ggttttgccagagagaatttaacgtttaaagtagtaaagggcgaaaacaaagaccggttt
atcgagcggtacctcgaaaaaaataaacacgaagccggcattatatatacagcgacaaga
aaagaaaccgaccgtttatatgagaaattaaaacgcagcggcatcaatgccggccgttat
cacggcggattggcggatgatgacagaaaagaccagcaggagcgttttcttaacgatcag
atacaagtgatggtagctacgtccgctttcggaatgggaatcgataagagcaacatcagg
tttgttttacacgcgcagattccgaaagatatggagagctattaccaggaagccggacgg
gccgggcgcgacggtcttaacagcgagtgtgtgctcttattttcgccgcaggatattatg
gtgcagcgttttttaatagaccaatcggccgccggagaagaaaaacaaaagcaggatctc
aaaaaactgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagaatgaggcggaagcttgcgaagcgtgcggcaattgcactgat
acaaggaccgcccatgacgttacaaaagaagcgcagatggtattgtcatgcatcatcaga
atgaatgagcgcttcggaaaaacgatggtggcgcaggtgcttagcgggtctaaaaataaa
aaagtgctggaaaacggcttcagcagcctgtccacttacggcattatgaagcatcaatcc
gcagcggaaatcagtgattttatcgaatttcttatttcagatgaatatatcagaatggcg
gacggcacatttcccacgcttatggtcacccaaaaaggcagggacgttctgcttggaaaa
agcgcagtcgcgagaaaagaagccttacaggccgccgccgtcaccgaaaatgatgaatta
tttgagcttctccggcgtctccgcaaagagattgcagctgaacagggtgtgcctccattt
gtcgtgttctcagatcagacgttaaaagaaatgtcggcgaaacttccgaaaacagatcag
gatcttctttccgtaaaaggggtcggggaacaaaaaagattgaaatacggagcggttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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