Bacillus amyloliquefaciens IT-45: KSO_011195
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Entry
KSO_011195 CDS
T02462
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami02020
Two-component system
bami02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KSO_011195
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSO_011195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bami03021
]
KSO_011195
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
bami02035
]
KSO_011195
Transcription machinery [BR:
bami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSO_011195
Bacterial motility proteins [BR:
bami02035
]
Flagellar system
Flagellar assembly proteins
Stator
KSO_011195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
MarR_2
UPF0122
IF2_N
UPF0175
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
AGF27730
LinkDB
All DBs
Position
complement(2267853..2268617)
Genome browser
AA seq
254 aa
AA seq
DB search
MQSLNYEDQVLWSRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGM
LGLYDALEKFDPGRDLKFDTYASFRIRGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQ
RYLRNVTPSEIAEELGMTEQDVVSTMNEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNV
PPEEKIMKDELIAQLAGKIHELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSK
ALFKLKHLLEKVIQ
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccttgaattatgaagatcaggtgctttggtcgcgctggaaagagtggaaagat
cctaaagccggtgatgatttaatgcgccgttacatgccgctggtcacatatcatgtcggc
agaatttccgtcggactgccgaaatcggtgcataaagacgatctaatgagccttggtatg
cttggtttatatgatgccctagaaaaatttgaccccggccgggatttaaaatttgatacc
tatgcctcgtttagaattcgcggtgcaatcatcgacgggctgcgtaaagaagattggctg
cccagaacttcacgggagaagacaaaaaaagtcgaagcggcaatcgaaaaacttgaacag
cgctaccttcggaatgtgacgccttcagagatcgcagaagagctggggatgacggagcag
gacgtagtatcaacgatgaatgaagggttttttgccaatctcttatcaattgatgaaaag
cttcacgaccaggatgacggtgagaatattcaagtgatgatcagagatgacaaaaatgtg
ccgccggaagaaaaaatcatgaaggacgagctgatcgctcagcttgcgggcaaaattcac
gagctctctgaaaaagagcagcttgtcgtcagtttattctataaagaagaactgactttg
accgaaatcggacaagtcctgaacctttcgacgtcgcggatttcacagattcattcaaag
gcgctgtttaaattaaagcacctgcttgaaaaagtaattcaataa
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integrated database retrieval system
