Bacillus amyloliquefaciens IT-45: KSO_018685
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Entry
KSO_018685 CDS
T02462
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSO_018685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bami03021
]
KSO_018685
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_018685
Enzymes [BR:
bami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSO_018685
Transcription machinery [BR:
bami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSO_018685
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSO_018685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
DUF961
PASTA
Motif
Other DBs
NCBI-ProteinID:
AGF29217
LinkDB
All DBs
Position
complement(3778012..3778956)
Genome browser
AA seq
314 aa
AA seq
DB search
MIEIEKPKIETVEISDDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG
VLHEFSTIEGVVEDVTTIILHIKKLALKIYSDEEKTLEIDVQGEGTVTAADITHDSDVEI
LNPDLHIATLGENASFRVRLTAQRGRGYTPADSNKRDDQPIGVIPIDSIFTPVSRLSYQV
ENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILTEHLNIFVGLTDEAQHAEIMVEK
EEDQKEKVLEMTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVK
AKLEELGLGLRKDD
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagattgaaaaaccaaaaatcgaaacggttgaaatcagcgacgatgccaaattt
ggtaagtttgtcgtagagccgcttgagcgtggatatggtacaactctgggtaactcctta
cgtcgtatcctcttatcctcactccctggtgccgctgtaacatcgatccagatagatggt
gtactgcacgaattctcgacaatcgaaggcgttgtggaagatgttacaacgataatcttg
cacattaaaaagcttgcattgaaaatctactctgatgaagagaagacgcttgaaattgat
gtacagggcgaaggaactgtcacagcagctgatattacacacgacagcgatgttgaaatc
cttaatccggatcttcatatcgcgactcttggtgagaatgcgagtttccgagttcgcctt
actgcacaaagaggacgtgggtatacacctgctgattcgaacaaaagagacgatcagcca
atcggcgtgattccgatcgattcaatctttacgccagtttctcgtttatcttatcaggta
gaaaacactcgtgtaggccaggttgcaaactatgacaaacttacacttgatgtttggact
gacggaagcactggaccgaaggaagcaattgctctcggttcaaagattttaactgaacac
cttaatatattcgtcggtttaactgacgaagctcagcatgctgaaatcatggttgaaaaa
gaagaggatcaaaaagaaaaagttcttgaaatgacgattgaggaacttgatctttctgtc
cgttcttacaactgcttgaagcgtgcgggcattaacacggttcaagaacttgcgaacaag
acggaagaagatatgatgaaagttcgcaacctgggacgcaaatcacttgaagaagtgaaa
gcgaaacttgaagaacttggactcggccttcgcaaagacgattga
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