Bacillus amyloliquefaciens IT-45: KSO_018860
Help
Entry
KSO_018860 CDS
T02462
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSO_018860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bami03021
]
KSO_018860
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_018860
Enzymes [BR:
bami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSO_018860
Transcription machinery [BR:
bami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSO_018860
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSO_018860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AGF29252
LinkDB
All DBs
Position
complement(3798754..3802353)
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPANTPLEKKQLLSEKEYRAYLDKYGNKFQASMGAEAINKLLQ
DIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEAFRNSGNKPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPHLKMYQCGLPKE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVA
ANSLKNVTFTEEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPDRFFLDKGA
DVKAVIAEQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFRYSTKAGITVGV
SDIVVLDDKQEILEEAQSKVDNVLKQFRRGLITEEERYERVISIWSSAKDVIQGKLMKSL
DEVNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDRGILAKPLKEGTEIIERLE
ERLIGRFARKQIKHPETGAVLINENELIDEDKALEIVEAGIEEVWIRSAFTCNTPHGVCK
RCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQATISEIDGTIAEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKVTEGDQITR
GQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
IDAGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMNYRKVKPVSNVQPSEDMVPAE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtgaacaattttgagtatatgaacatcggtcttgcttcaccggataaaatc
cgttcatggtcttttggtgaagtgaaaaagcctgaaacgataaactatcgtacgttgaaa
cctgaaaaggacggcctgttctgcgaacgcattttcggaccgactaaggactgggaatgt
cattgcggcaagtacaagcgggttcgttataaaggcgtagtttgtgaccgttgcggagtt
gaagtaacgcgggctaaagtccgtcgtgagagaatggggcatattgaactggctgccccg
gtttctcacatttggtatttcaaaggtattccgagccgtatgggtcttgtattggatatg
tcaccgcgtgcgctggaagaagttatttactttgcttcttacgtcgtaactgacccggcc
aatacaccgctcgaaaagaaacagcttttatctgaaaaggaataccgtgcgtatctggat
aagtacggtaacaaattccaagcctctatgggtgcggaagccattaataaacttctgcag
gacatcgaccttgtcaaagaagttgatatgttaaaagaagagctgaagacttctcaagga
cagcgccgtacacgtgcgatcaaacgccttgaagtgcttgaagccttccgtaattcagga
aacaagccgtcttggatgattctcgacgtgcttccggttattccgcctgaattaagaccg
atggttcagcttgacggcggacgtttcgcaacgtctgacctgaacgacctttaccgtcgt
gtcatcaaccgtaataaccgtttaaaacgtctgttagacctcggcgcgccaagcatcatc
gttcagaacgaaaaacgtatgcttcaggaagcggtcgacgctctgattgacaacggacgc
cgcggccgtccggttaccggaccgggtaaccgtccgcttaaatctctttctcatatgctg
aaagggaaacaagggcgtttccgtcagaaccttctcggtaaacgtgtagactactcaggc
cgttccgttatcgtcgtaggcccgcatctgaaaatgtatcagtgcggtttgccgaaggaa
atggcgcttgagctcttcaagcctttcgtcatgaaagagcttgttgaaaaaggccttgct
cacaatatcaagagcgcaaaacgcaaaatcgaacgcgtgcagcctgaagtatgggatgta
cttgaatctgtcattaaggagcatccggtcttactgaaccgtgcccctactcttcacaga
ttaggtatccaggctttcgaaccgacgcttgttgaaggacgcgccatccgtcttcacccg
ttagtatgtacagcttataacgctgactttgacggtgaccaaatggcggttcacgtacct
ttatcagctgaggctcaagctgaggcgcgcattctgatgcttgcagcccaaaacatcttg
aaccctaaagatggtaaaccggttgttacgccgtctcaggatatggtattaggaaactac
tacctgacgcttgaacgcgccggagcagtcggcgagggtatggttttcaaaaatacggac
gaagcgcttcttgcttatcaaaacggttatgttcaccttcatacgagagtagctgttgca
gcgaactcccttaagaatgtgacatttactgaagaacagcgttcaaaattgttaattaca
actgtcggtaagctcgtcttcaatgaaattcttccggaatcattcccttacatgaatgaa
ccaacgaagagcaacattgaagagaagacacctgaccgtttcttcttagataaaggtgct
gacgtaaaagctgtgattgctgagcagccgatcaacgcaccgtttaaaaaaggtattttg
ggtaaaatcatcgcggaaatctttaaacgattccatatcacggaaacgtctaaaatgctt
gaccgcatgaaaaacctcggtttcagatattcaacgaaagccggcatcacagtaggggtt
tctgatatcgtcgttctcgatgataaacaggaaatccttgaagaagcacaaagcaaagtg
gataatgttctgaaacagttcagacgcggtttaatcaccgaagaagaacgttatgaaaga
gtcatttcaatttggagttcagcgaaagatgttatccaaggcaaactgatgaaatcatta
gacgaagtcaacccgatctacatgatgagtgattcaggagcccgtggtaacgcatctaac
tttacacagcttgcgggtatgcgcggtctgatggccaacccggctggacgaatcattgaa
ttgccgattaaatcaagtttccgtgaaggtctgacagtattggagtactttatctccact
cacggtgcgcgtaaaggtcttgccgataccgccctgaaaacagctgactcaggttacctt
acacgccgtcttgttgatgttgcgcaggatgttatcattcgtgaaacagattgcggaaca
gaccgcggtattcttgcaaaaccgctcaaagaaggcacggaaatcatcgagcgtctggaa
gagcgtctgattggacgtttcgccagaaaacagatcaaacatcctgaaacgggtgctgtg
ctcattaacgaaaatgaattgatcgatgaagataaagcgctggaaatcgttgaagccgga
attgaagaagtgtggatccgttctgcgttcacatgtaacactcctcatggtgtatgtaaa
cgatgctacggacgaaaccttgcaaccggaactgatgttgaagtcggcgaagcagtaggt
attatcgccgctcaatctatcggtgagcctggaacacagttaacgatgcgtacgttccac
acaggcggggttgccggagacgatatcacacaaggtcttccgcgtatccaagagcttttc
gaagcgcgtaatccgaaaggtcaagcgacgatttctgagattgacggtacaattgccgaa
atcaatgaagtccgcgacaaacagcaggagattgttgttcagggcgctgttgagacccgt
tcatacacggcaccttacaactcacgcctgaaagtgactgagggtgatcagattacccgc
ggtcaagtgctgacggaaggttcaatcgatccgaaagaacttcttaaagtcactgacctg
acaacggttcaggaatatcttctgcatgaggttcagaaggtttaccgtatgcagggggtt
gaaatcggcgataaacacgtagaagtaatggttcgccagatgcttcgcaaagtccgtgta
atcgatgccggagatactgatgttctccctggcacattgcttgatattcaccaatttaca
gaagcgaacaaaaaagtgctgcttgaaggcaatcgacctgctacaggccgtcctgtcctt
ctcggtatcacgaaagcttcactcgagacggattcattcttgtctgctgcatcattccag
gaaacaacacgcgttcttacagatgctgcgattaaaggcaagcgtgatgaacttctcggc
ctgaaagagaatgttatcatcggtaaactggttccggccggtacaggtatgatgaattac
agaaaagtaaaacctgtttcaaacgttcagccttcggaagatatggttccggctgaataa
DBGET
integrated database retrieval system
