Bacillus amyloliquefaciens IT-45: KSO_019125
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Entry
KSO_019125 CDS
T02462
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KSO_019125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_019125
Enzymes [BR:
bami01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSO_019125
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KSO_019125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AGF29305
LinkDB
All DBs
Position
complement(3863826..3867359)
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAAVRRMLPPKELWKSSQLVISLGDDIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARAM
ERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPADTLLLLDEVSRIHEMEDQLQKEEAEFTTSLLEEGKILHDIHLSFSFQELMSEKRRPA
IYYSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLSGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETITERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAIRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQNVKKETIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttattaaagaaagcgatgattttaaatccattgtcaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctccgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacggaagatctgacggcgcttctcggggatcaatctgttttt
ttataccccgtgaatgaattgatttcttcagaaattgcggtagcgagtcctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgccggtcgttgtggcg
cccgttgcggcagtgagaagaatgcttccgccgaaggagctgtggaaaagcagccagctc
gtcatttcactcggagacgatatagaaccggaccagctgtccgcgcgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacgtcggagcatccggtgcgaattgaactgtttgatacggag
gtcgattccatcagaagcttcaattctgatgaccagagatcaatcgagacgctcaaacat
gtggcgatcggaccggcgaaggaattgatcatcagggcggaagaaaaagcccgggcaatg
gaaaggctcgataaagggcttgccgacagtctgaaaaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaaacctgctagtttgctagattat
acaccggcagacacgttgttattgttagacgaggtcagccgcattcatgaaatggaggat
cagctgcaaaaagaagaggccgaatttacgacaagtctgctcgaggaagggaaaattctg
catgacattcatttatccttcagctttcaggagcttatgagcgaaaagcggcgcccggct
atttattattcattatttttgcgtcatgtccagcatacaagccctcagaatatcgtgaat
gtgacaagccggcagatgcagagttttcacgggcagatgaatgtcctctcaggtgaaatg
gagcgctttaagaaatcaaacttcaccgtcgtctttttaggcgcaaataaggacagaacc
gacagattggcatccgtgctggctgattacgaaattgaagccgcgaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaatcaag
aaaaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caggtcggtgactatgtcgtccacgtcaaccacgggatcggtaagtacttggggatcgaa
acactggaaatcaaaggcattcataaagattacctcaacattcattatcagggcagcgat
aagctgtatgtccctgtagaacaaatcgatcaggtgcagaagtatgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtgaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgggaagca
agcaaaggctatgcgttctcgcccgatcatgaaatgcagcggcagttcgaatctgctttc
ccttaccaggaaacagaggaccagctccgttccattcaggagattaaaaaggatatggaa
agagaacgcccgatggaccgtttgctttgcggcgatgtgggttacgggaagacggaggta
gccatccgagcggcctttaaagcgatcgcagacggaaagcaggtcgcgcttcttgtgccg
acgacaatactcgcgcagcagcattatgaaaccattacggagcgttttcaggactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatccaatgaaacgattaaa
ggactgaaaaacggaacggtagacatcgtaatcggaacccacaggctcttatctaaagac
gtcgtctataaagatctcggcttgctcatcattgatgaagagcagcgcttcggcgtaacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtactgactcttacagcgaca
ccgattccgcgtacgcttcatatgtccatgctcggtgtgcgggatttatccgttattgaa
acgccgccggaaaaccgtttccctgttcagacatatgtcgtggaatacaacggcgcgctt
gtacgagaagctatcgaaagagaactggcgcgcggaggacaggtatatttcctgtacaac
cgcgtggatgacatcgagcggaaggctgatgaaatttccatgcttgttcccgatgcaaaa
gtggcatatgcccacggaaaaatgaccgaaaatgaattggaaagcgtcatgctcaatttt
ctggaaggggaatcagacgtccttgtcagcacgactattattgagacaggcgtagatata
ccaaatgtcaataccttgattgtgttcgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgttccaaccgcgtcgcttacgcttattttacgtaccgc
agagacaaagtgcttactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatcaggctttaaaatcgccatgcgtgacttgacgatcaggggagcggggaac
cttctcggcgcccagcagcacggctttatcgactcagtcggttttgacctgtactcgcaa
atgctcaaggaagcgattgaagagcggaaaggcgatattccgaaaagcgaacagtttgag
acagaaatcgatatcgagcttgacgcgtatattcctgaaaactatatacaagacggcaag
caaaaaatcgacatgtataaacgcttcagatcaatcgccacaattgaggagaaaaatgag
ctccaagatgaaatcatcgacaggttcggcagctatcctaaagaagttgaatggctgttt
acggttgctgagatgaaggtatacggaaaatatgaacgcgtcgaactcatcaagcaggat
aaagacgcgatcagatttaccatttctgaagaggccagcgcacagattgacggccagaaa
ttattcgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgtgctc
ggcatgctgaaaggccttcagaatgtgaagaaagaaacaatcgcgtcttcataa
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