KEGG   Bacillus velezensis UCMB5036: BAM5036_0058
Entry
BAM5036_0058      CDS       T02480                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
baml  Bacillus velezensis UCMB5036
Pathway
baml03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:baml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BAM5036_0058 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:baml03400]
    BAM5036_0058 (mfd)
Enzymes [BR:baml01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BAM5036_0058 (mfd)
DNA repair and recombination proteins [BR:baml03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BAM5036_0058 (mfd)
SSDB
Motif
Pfam: UvrB_inter TRCF DEAD Helicase_C CarD_TRCF_RID ResIII MFD_D3 Cas3-like_C_2 UB2H RecG_dom3_C
Other DBs
NCBI-ProteinID: CCP20128
LinkDB
Position
61204..64737
AA seq 1177 aa
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAAVRRMLPPKELWKSSQIVISLGDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARAM
ERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPADTLLLLDEVSRIHEMEDQLQKEEAEFMTSLLEEGKILHDIHLSFSFQELMSEKRRPA
IYYSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAIRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQNVKKETIASS
NT seq 3534 nt   +upstreamnt  +downstreamnt
atggacaacattcaaacctttattaaagaaagcgatgattttaaatccattgtcaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctccgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacggaagatctgacagcgcttctcggggatcaatctgttttt
ttataccccgtgaatgaattgatttcttcagaaattgcggtagcgagccctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgccggtcgttgtggcg
cccgttgcggcagtgagaagaatgcttccgccgaaggagctgtggaaaagcagccagatc
gtcatttcactcggagacgaaatagaaccggatcagctgtccgcgcgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacgtcggagcatccggtgcgaattgaactgtttgatacggag
gtcgattccatcagaagcttcaattctgatgaccagagatcaattgagacgctcaaacat
gtggcgatcggaccggcgaaggaattgatcatcagggcggaagaaaaagcccgggcaatg
gaaaggctcgataaagggctggccgacagtctgaaaaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaaacctgctagtttgctagattat
acaccggcagacacgttgttactgttagacgaggtcagccgcattcatgaaatggaggat
cagctgcaaaaagaagaggccgaatttatgacaagtctgctcgaggaagggaaaattctg
catgacattcatttatccttcagctttcaggagcttatgagcgaaaagcggcgcccggct
atttattattcattatttttgcgtcatgtccagcatacaagccctcagaatatcgtgaat
gtgacaagcaggcagatgcaaagttttcacgggcagatgaatgtgctcgcaggtgaaatg
gagcgctttaagaaatcaaacttcactgtcgtctttttaggcgcaaataaggacagaacc
gacagattggcatccgtgctggctgattacgaaattgaagccgcaaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaatcaag
aaaaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caggtcggtgactatgtcgtccacgtcaaccacgggatcggtaagtatttggggatcgaa
acactagaaatcaaaggcattcataaagattacctcaacattcattatcagggcagcgat
aagctgtacgtccctgtagaacaaatcgaccaggtgcagaagtacgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtgaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgggaagca
agcaaaggctatgcgttctcgccggatcatgaaatgcagcggcagttcgaatctgctttc
ccttatcaggaaacagaggaccagctccgttccattcaggagattaaaaaggacatggaa
agagagcgcccgatggaccgtttgctttgcggtgatgtcggttacgggaagacggaggta
gccatccgagcggcctttaaagcgatcgccgacggaaagcaggtcgcgcttcttgtgccg
acgacaatactcgcgcagcagcattatgaaaccattatggagcgtttccaggactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatccaatgaaacgattaaa
ggcctgaaaaacggaacggtagacatcgtaatcggaacccacaggctcttatctaaagac
gtcgtctataaagatctcggcttgctcatcattgatgaagagcagcgctttggcgtaacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtgctgactcttacagcgacg
ccgataccgcgtacgcttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgtttccctgttcagacatatgtcgtggaatacaacggcgcgctt
gtgcgggaagccatcgaaagagaactggcgcgcggaggacaggtatatttcttgtacaac
cgcgtggatgacatcgagcggaaggctgatgaaatttccatgcttgttcccgatgcgaaa
gtggcttatgcccacggaaaaatgaccgaaaatgaattggaaagcgtcatgctcaatttt
ctggaaggggaatcagacgtccttgtcagcacgaccattattgagacaggcgtagatata
ccaaatgtcaatactttgattgtgttcgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgttccaaccgcgtcgcttacgcgtattttacgtaccgc
agagacaaagtgctcactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatcaggctttaaaatcgccatgcgtgacttgacgatcaggggagcggggaac
cttctcggcgcccagcagcacggctttatcgactcagtcggttttgacctgtactcgcaa
atgctcaaggaagcgattgaagagcggaaaggcgatattccgaaaagcgaacagtttgag
acagaaatcgatatcgagcttgacgcgtatattcccgaaaactatatacaagacggcaag
caaaaaatcgacatgtataaacgcttcaggtcaatcgccacaattgaggagaaaaatgag
ctccaagatgaaatcatcgacaggttcggcagctatcctaaagaagttgaatggctgttt
acggttgctgagatgaaggtatacggaaaatatgaacgcgtcgaactcatcaagcaggat
aaagacgcgatcagatttaccatttctgaagaggccagcgcacagattgacggccagaaa
ttattcgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgttctc
ggcatgctgaaaggacttcagaatgtgaagaaagaaacaatcgcatcttcataa

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