Bacillus velezensis UCMB5036: BAM5036_1084
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Entry
BAM5036_1084 CDS
T02480
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03420
Nucleotide excision repair
baml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAM5036_1084 (yjcD)
03430 Mismatch repair
BAM5036_1084 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baml03400
]
BAM5036_1084 (yjcD)
Enzymes [BR:
baml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAM5036_1084 (yjcD)
DNA repair and recombination proteins [BR:
baml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAM5036_1084 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BAM5036_1084 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
CCP21134
LinkDB
All DBs
Position
complement(1119601..1121886)
Genome browser
AA seq
761 aa
AA seq
DB search
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKG
DFTACEKACAAEEPLAEKEKEEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPF
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAYMIEHLGIS
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILCHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEEHLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNI
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
AHAVVKKNKKRYEKTLSAVKDGVHNPVMFFPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIEKIKQIVPFFASIRTMKPVEA
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaataaccgaacgatacatttacatacatattctagagaacat
taccaattcctttttgaagaagctcagaaaggaaatattttttgcgcacattgtgagcag
cccgtcttgatgcggctttcgattttagagcagccggcattttatcaccggcaaaaggga
gacttcaccgcctgtgaaaaagcatgcgcggccgaggaaccactagcggagaaagaaaaa
gaagagtataaggaagccggcatgttccgcctgccgaaaggaaaagcgatttcagagaat
ccgaaaccgatcgtctcagaatggaaaagcccgaaaaaagtgcctgcggccgaaccgttt
tcaccaacatccgaggcggctgatacatctttgttccccggcatcggcctgaaccgtgaa
cagatgaaggcagttactgaaacggacgggcctttattagtgcttgccggagcgggaagc
ggaaaaacaagggtgctgacagcacgcgccgcctatatgattgaacacctcggcatttca
cctgagaatatgctgcttgtgacctttacgacaaaagccgtcgccgaaatgaaagagcgg
atggcgaatgagtacggtctggcagccggaaaagtctcccgtctcgtgacaggaacattc
cacagttttttctataaaatactctgtcattatgattcttcaaaatggaacggcagccag
cttttaaaaatggagtggcaaaaagagcaatatgtgaaaaaggcgctctatgaagaacat
ttggatgaaaaagagtttcccgtcgaccaggcgcttcagcttatcggctgctggaaaaac
acgtatctcccccatgagaccattccgcttgcggacgactgggagaaaaaagtgtacagg
ctttacgaacattacgaacggcagaagcgggaaaaacggcaatttgattttgatgacatg
gcccaaggctgttatgaactgtttcaaagccggcctgatattctcgcgcagtaccaaaac
agattttctcatattttgattgatgaatttcaagatatcaatcctgtccagtacaacatt
atgcaaatgatcgcaagccctgagaataacctgtgctgcgtgggtgatgacgaccaatcc
atttatgcattccgcggcagcagcccgtctttcattcttgactttcaaaaggactatccg
gcagcaaagaccatttacttaacggcaaattaccgctcgccgcatccgatcgtctcaagc
gctcatgccgtcgtaaagaaaaataaaaaacggtatgaaaaaacactttctgccgtcaaa
gacggcgttcacaatcccgtgatgttttttccttacgatgaagaagaagaagcgaccatg
atcgtttcggatatgaaagagaaaattcaaaacggggcgagtcctgacgattttgccgtg
ctttaccggacaaacagcgccggacgggccatttatgaaagactgcaccaatcatcgatt
ccttatcatgccgaccggggcgtgcagacgttctacagccgcagaatcgtacgccagatc
ctcgcctacttatatgcgagtcagaatgaagatgatccggatgcggtgaaagacctgctg
cccgccttatttttaaagcaatccgccctgcaaacgttaaaggcgctgtcaatcacggaa
gattgcacgatgattaaggcactgacgaaactgcctgacctgaagccttttcaaatagag
aagatcaagcagatcgttccgtttttcgcaagcatccggacaatgaagccggttgaagcc
atcacctttgcagaaagcaaaatgggtttttccgagtatttaaaaaaacggggcaatgag
ggaaacaaactggaaaaaggctctgatgatctcagggatgtcaaagtggccgcaaaaaaa
ttcaaaaccattcccgattttcttgcgcatgtcgatcatatgcgcgccgctgagaatctg
aaaaccgatgaaaacggcgtcgaactgctgaccattcaccgctctaaaggtcttgaattc
aatacggtctatattttaggcgcggctgacggctcgatcccccatgacttcgcacttgag
acggcgagacagggcgatcccgctccgctcgaagaagaaagacggcttctgtatgtcgca
atgacaagggccatgcagcatttatatgtatcttgtcccgcgtacaggcggggaaaaaca
gcgcgcagctcaagatttctcgagccccttcttcggacggacagacggagcgcactcagg
atataa
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integrated database retrieval system
