Bacillus velezensis UCMB5036: BAM5036_1599
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Entry
BAM5036_1599 CDS
T02480
Symbol
rnjB
Name
(GenBank) ribonuclease J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAM5036_1599 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baml03019
]
BAM5036_1599 (rnjB)
Messenger RNA biogenesis [BR:
baml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAM5036_1599 (rnjB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CCP21643
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Position
1657104..1658804
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AA seq
566 aa
AA seq
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MDGYKTRRIQILKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLG
IDVVIPDISYLVERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLTLALLREKLK
QYGHNRKADLREVHSKSVITFESTKVSFFKTIHSIPDSVGVSFKTSLGSIVCTGDFKFDQ
TPAYHQSCDIGEIAKIGNSGVLALLSDSANAERPGYTPSEAYVSGEISDAMNNSENRVII
AVFASNINRIQQVIQAAVQNGRKLAIAGKNLQNVLQLGRKLGYIEAEDEMFIPVQDVKKY
PKREVAIVTAGSHGEPLAALTRMAKQAHKQLNIEEGDTVVIASTPIPGHELIYSKTVNLL
ARAGAQVIFAQKRVHVSGHGSQEELKLMLNLLKPKYLIPVNGEFRMQKAHSKIAEEIGMK
RSDIFLIEKGDVVEFRGQNVKIGDKVTYGNVLIDGLGVGDIGNIVLRDRRLLSQDGILIV
VISLDKQKKNLVSGPEIITRGFVYVRESEGLIVQATELVRSIVTEATETSAVEWSTLKQA
MRDALNQFLYEKTKRKPMIIPIIMEV
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtataagactaggaggatacagattttgaaaaagaaaaatacagaaaacgtc
agaattatcgcccttggcggcgtcggagaaattgggaagaacctatatgtcattgaaatt
gactcagacatatttgtagtggatgcagggctgatgcaccctgaaaatgaaatgctcggt
attgatgtcgtcattccggatatttcctacttagtagaacgggctgaccgcgtgaaggcc
atctttctgacacacgggcacgatgaaaacatcgggggcgtcttttatttattgaataag
ctgtcggtgccggtatacggaacgaagcttacgcttgcattactgagagaaaaactcaag
cagtacgggcataatcgaaaagctgatttgcgtgaagttcactctaaatcagtcattaca
tttgaatcaacgaaagtatcgttctttaaaacgattcacagtattccggattcagtggga
gtcagcttcaaaacatcacttggctctattgtatgcacgggagactttaaatttgaccag
acgcctgcttatcaccaatcatgtgatattggcgaaattgccaaaatcggaaacagcggc
gtgctcgccctgctttctgacagcgccaatgcggagcgcccggggtatactccgtccgaa
gcatatgtaagcggtgaaatttccgatgcgatgaacaattcagaaaaccgtgtcatcatt
gctgtattcgcgtctaatatcaaccggatccagcaagtgatacaggctgccgtccagaac
ggccgcaaacttgcaatcgccggaaaaaatttgcaaaacgtgcttcagcttgggcgcaag
ctcggctatattgaagccgaagatgaaatgtttattcctgtgcaggatgtgaaaaaatat
ccgaagcgggaagtggcaattgttacagccggaagccatggtgagccgctggccgctctt
acgcggatggccaagcaggcgcacaagcagcttaacattgaagaaggagacaccgttgtc
attgcatcaacaccgattccggggcatgaattgatatattccaaaaccgtcaacctgctt
gcccgcgccggcgctcaagtcattttcgcccaaaagcgcgtgcatgtgtccggtcacggt
tcgcaggaagaattgaaactcatgcttaatttgctgaaaccgaaatatttaattccggtt
aacggtgaattcagaatgcaaaaagcgcattccaaaatcgcagaagagatcggcatgaaa
cgcagcgacattttcttgattgaaaaaggtgacgtcgttgaattccgcggccagaatgtg
aaaatcggggataaagtcacgtacggaaacgttctgattgacggcctcggagtcggcgac
atcggcaacatcgtgctgagagaccgccgcttattgtcacaagacggtattctcatcgtc
gtgatttcactcgataagcagaaaaagaacctcgtatcaggtcctgagatcattacgcgc
ggtttcgtgtatgtcagagaatcagagggtctaattgtacaagctactgagctcgtccgc
tctatcgtgactgaagcgacggaaacatctgccgtagaatggtccacgctgaaacaagca
atgcgtgatgcgctgaatcaattcctttatgaaaaaacaaaacgcaagccgatgatcatt
ccgatcattatggaagtataa
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