Bacillus velezensis UCMB5036: BAM5036_1827
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Entry
BAM5036_1827 CDS
T02480
Symbol
rtbI
Name
(GenBank) ribonuclease toxin of toxin-antitoxin systems RttI-RttJ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAM5036_1827 (rtbI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baml03019
]
BAM5036_1827 (rtbI)
03400 DNA repair and recombination proteins [BR:
baml03400
]
BAM5036_1827 (rtbI)
Enzymes [BR:
baml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAM5036_1827 (rtbI)
Messenger RNA biogenesis [BR:
baml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAM5036_1827 (rtbI)
DNA repair and recombination proteins [BR:
baml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BAM5036_1827 (rtbI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CCP21866
LinkDB
All DBs
Position
complement(2012252..2014030)
Genome browser
AA seq
592 aa
AA seq
DB search
MLEKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIYERLTGLKQGAYRLFYITPERLT
SSEFIHILQNITVPLVAIDEAHCISHWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKHSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDSLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGENEAEACGACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLSGSKNKKVLENGFSSLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVSRKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDQDLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagaggagagaaaaaacacggtctgcattatg
ccgacggggggcggaaaatcaatctgctatcagattcccgcactgctgtttgaaggaacc
acaatcgttatttcccctcttatttccttaatgaaagatcaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcactcagacaagccgtgacatttatgagcgc
ctgaccggtttgaaacaaggggcttaccggctcttttacatcacaccggagcgtttgact
tcttctgaattcattcacatcctgcagaatattacggttcctcttgtcgccattgacgaa
gctcactgtatatcgcactggggacatgatttcaggccgagttaccggaatatcgaaatc
ctttttaatgaactaaaagaaccgcccgtcatcatcgcattaacggcgacggctacgcct
gaggttcatgatgatatctgcaaacagcttcatattaagaaagaacaaactgtatatacc
ggttttgccagagagaacttaacgtttaaagtagtaaagggcgaaaacaaagaccggttt
atcgagcggtatctggaaaaaaataaacacgaagccggcattatatatacagcgacaaga
aaagaaaccgaccgtttatatgagaaattaaaacacagcggcatcaatgccggccgttat
cacggcggattggcggatgatgacagaaaagaccagcaggagcggtttcttaacgatcag
atacaagtgatggtagctacgtccgctttcggaatgggaatcgataagagcaacatcagg
ttcgttttacacgcgcagattccgaaagatatggagagctattaccaggaagccggacgg
gccgggcgcgacagtcttaacagcgagtgtgtgctcttgttttcgccgcaggatattatg
gtgcagcgttttttaatagaccaatcggccgccggagaagaaaaacaaaagcaggatctc
aaaaaactgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagaatgaggcggaagcttgcggagcatgcggcaattgcactgat
acaaggaccgcccatgacgtcacaaaagaagcgcagatggtattgtcatgcatcatcaga
atgaatgagcgcttcggaaaaacgatggtggcgcaggtgcttagcgggtcaaaaaataaa
aaagtgctggaaaacggcttcagcagcctgtccacttacggcattatgaagcatcaatcc
gcagcggaaatcagtgattttatcgaattccttatttcagatgaatatatcagaatggcg
gacggcacatttccgacgcttatggtcacccaaaaagggagggacgttctgcttggaaaa
agcgcagtctcgagaaaagaagccttacaggccgccgccgttaccgaaaatgatgaatta
tttgagcttctccggcgtctccgcaaagagattgcagctgaacagggtgtgcctccattt
gtcgtgttctcagatcagacgttaaaagaaatgtcggcgaaacttccgaaaacggatcag
gatcttctttccgtaaaaggggtcggggaacaaaaaagattgaaatacggagcggttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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