Bacillus velezensis UCMB5036: BAM5036_3354
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Entry
BAM5036_3354 CDS
T02480
Symbol
rho
Name
(GenBank) transcriptional terminator Rho
KO
K03628
transcription termination factor Rho
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAM5036_3354 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baml03021
]
BAM5036_3354 (rho)
03019 Messenger RNA biogenesis [BR:
baml03019
]
BAM5036_3354 (rho)
Transcription machinery [BR:
baml03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BAM5036_3354 (rho)
Messenger RNA biogenesis [BR:
baml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BAM5036_3354 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
NACHT
AAA_22
AAA
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CCP23362
LinkDB
All DBs
Position
complement(3525843..3527129)
Genome browser
AA seq
428 aa
AA seq
DB search
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNYLSTRILDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNQPDAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWAIRKSMSDSPDFAEKFMRKMKKTKTNQEFFDLINQEWKQA
NLSSSARR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtatctatttcctctttggaaaatatgaaattaaaagaactatatgaactg
gccagacattataaaatctcctactacagcaaactgactaaaaaagaattaatctttgcc
attctgaaagccaacgccgagcaggaggatcttctgtttatggaaggcgtgctcgaaatt
atccaatcggaaggattcggcttcctcagaccgattaattactcgccaagctcagaagac
atctacatttctgcttctcagatccgccgctttgatttaagaaacggtgacaaagtatcc
ggcaaggtgcgtccgccgaaagaaaatgaacgctattacggacttttgcacgttgaagcg
gtaaatggagacgatccggaatctgcgaaggagcgcgtccattttcctgcgcttactccg
ctttatccggaccgccaaatggtgcttgagacgaaaccgaattatctctcaacaagaatt
cttgatatgatggctcccgtcggtttcggccagcgcggtctgatcgtggcgccgccgaaa
gccggtaaaaccatgctgttaaaagaaatcgctaacagcattacgacaaatcagcctgac
gctgaattgatcgttctcttaattgatgaaagaccggaagaagtaacggatattgaacgt
tccgtagcgggcgatgtcgtcagctcgacgttcgatgaagtgccggaaaatcacattaag
gtagcggagcttgtgcttgaacgggcgatgcgtctcgttgaacacaaaaaagacgttatc
attctgatggacagcattacccgcctggcacgggcctacaacctcgttatcccgccaagc
ggacgtacgctttccggcgggattgacccggctgcgttccatcgtccgaagcgctttttc
ggtgccgcgagaaacattgaagagggcggcagtctgaccattttggcgacggcgctcgta
gacacgggctcccggatggatgacgtcatctatgaagagtttaaaggaacgggcaacatg
gagcttcaccttgaccgttctcttgcggaaagacggattttcccggcgatcgatatccgc
cgctccggcacacggaaggaagagctgcttgtgccgaaagagcatcttgaccgtttatgg
gcgatccgcaaatcgatgtctgattctccggacttcgcagagaagtttatgagaaaaatg
aaaaaaacaaaaacgaatcaggaattcttcgatctgattaaccaagaatggaagcaggca
aacctttcatcatcagcccgccgctga
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