Bacillus velezensis UCMB5113: BASU_0059
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Entry
BASU_0059 CDS
T02796
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bamn
Bacillus velezensis UCMB5113
Pathway
bamn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bamn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BASU_0059 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamn03400
]
BASU_0059 (mfd)
Enzymes [BR:
bamn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BASU_0059 (mfd)
DNA repair and recombination proteins [BR:
bamn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BASU_0059 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDG24372
LinkDB
All DBs
Position
61188..64721
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAAVRRMLPPKELWKSSQLVISLGDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARAM
EKLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPADTLLLLDEVSRIHEMEDQLQKEEAEFMTSLLEEGKILHDIHLSFSFQELMSEKRRPA
IYYSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAIRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQDVKKETIASS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttattaaagaaagcgatgattttaaatccattgtcaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctccgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacggaagatctgacggcgcttctcggggatcaatctgttttt
ttataccccgtgaatgaattgatttcttcagaaattgcggtagcgagccctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgccggtcgttgtggcg
cccgttgcggcagtgagaagaatgcttccgccgaaggagctgtggaaaagcagccagctc
gtcatttcactcggagacgaaatagaaccggatcagctgtccgcgcgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacgtcggagcatccggtgcgaattgaactgtttgatacggag
gtcgattccatcaggagcttcaattctgatgaccagagatcaattgagacgctcaaacat
gtggcgatcggaccggcgaaggaattgatcatcagggcggaagaaaaagcccgggcgatg
gaaaagctcgataaagggcttgccgacagtctgaaaaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaaacctgctagtttgctagattat
acaccggcagacacgttgttactgttagacgaggtcagccgcattcatgaaatggaggat
cagctgcaaaaagaagaggccgaatttatgacaagtctgctcgaggaagggaaaattctg
catgacattcatttatccttcagctttcaggagcttatgagcgaaaagcggcgcccggct
atttattattcattatttttgcgtcatgtccagcatacaagccctcagaatatcgtgaat
gtgacaagccggcagatgcagagttttcacgggcagatgaatgtgctcgcaggtgaaatg
gagcgctttaagaaatcaaacttcaccgtcgtctttttaggcgcaaataaggacagaacc
gacagattggcatccgtgctggccgattacgaaattgaagccgcaaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaatcaag
aaaaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caggtcggcgactatgtcgtccacgtcaaccacgggatcggtaagtatttggggatcgaa
acactagaaatcaaaggcattcataaagattacctcaacattcattatcagggcagcgat
aagctgtacgtccctgtagaacaaatcgaccaggtgcagaagtacgtcggctctgaagga
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtgaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgggaagca
agcaagggctatgcgttctcgccggatcatgaaatgcagcggcagttcgaatctgctttc
ccttatcaggaaacagaggaccagctccgttccattcaggagattaaaaaggatatggaa
agagagcgcccgatggaccgtttgctttgcggtgatgtgggttacgggaagacggaggta
gccatccgagcggcctttaaagcgatcgccgacggaaagcaggtcgcgcttcttgtgccg
acgacaatactcgcgcagcagcattatgaaaccattatggagcgtttccaggactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatccaatgaaacgattaaa
ggcctgaagaacggaacggtagacatcgtaatcggaacccacaggcttttatctaaagat
gtcgtctataaagatctcggcttgctcatcattgatgaagagcagcgctttggcgtaacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtgctgactcttacagcgacg
ccgataccgcgcacgcttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgtttccctgttcagacatatgtcgtggaatacaacggcgcgctt
gtgcgggaagccatcgaaagagaactggcgcgcggaggacaggtatatttcttgtacaac
cgcgtggatgacatcgagcggaaggctgatgaaatttccatgcttgttcccgatgcgaaa
gtggcatatgcccacggaaaaatgactgaaaatgaattggaaagcgtcatgctcaatttt
ctggaaggggaatcagacgtccttgtcagcacgactattattgagacaggcgtagatata
ccaaatgtcaataccttgattgtgttcgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgttccaaccgcgtcgcttatgcgtattttacgtaccgc
agagacaaagtgctcactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatcaggctttaaaatcgccatgcgtgacttgacgatcaggggagcggggaac
cttctcggcgcccagcagcacggctttatcgactcagtcggttttgacctgtactcgcaa
atgctcaaggaagcgattgaagagcggaaaggcgatattccgaaaagcgaacagtttgag
acagaaatcgatatcgagcttgacgcgtatattcctgaaaactatatacaagacggcaag
caaaaaatcgacatgtacaaacggttcaggtcaatcgccacaattgaggagaaaaatgag
cttcaagatgaaatcatcgacaggttcggcagctaccctaaagaagttgaatggctgttt
acggttgctgagatgaaggtatacggaaaatatgaacgcgtcgaactcatcaagcaggat
aaagacgcgatcagatttaccatttctgaagaggccagcgcacagattgacggtcagaaa
ttgttcgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgtgctc
ggcatgctgaaaggccttcaggatgtgaagaaagaaacaatcgcgtcttcataa
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