Bacillus velezensis UCMB5113: BASU_1123
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Entry
BASU_1123 CDS
T02796
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bamn
Bacillus velezensis UCMB5113
Pathway
bamn03420
Nucleotide excision repair
bamn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BASU_1123 (yjcD)
03430 Mismatch repair
BASU_1123 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamn03400
]
BASU_1123 (yjcD)
Enzymes [BR:
bamn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BASU_1123 (yjcD)
DNA repair and recombination proteins [BR:
bamn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BASU_1123 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BASU_1123 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
CDG25421
LinkDB
All DBs
Position
complement(1143387..1145672)
Genome browser
AA seq
761 aa
AA seq
DB search
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCEQPVLMRLSILEQPAFYHRQKG
DFTACEKACAAEAPQAEKEKEEYKEAGMFRLPKGKAISENPKPIVSEWKSPKKVPAAEPF
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILCHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNI
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
AHAVVKKNKKRYEKTLSAVKDGVHNPVMFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPIEA
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaataaccgaacgatacatttacatacatattctagagaacat
taccaattcctttttgaagaagctcagaaaggaaatattttttgcgcacattgtgagcag
cccgtcttgatgcggctttcgattttagagcagccggcattttatcaccggcaaaaggga
gacttcaccgcctgtgaaaaagcatgcgcggccgaggcaccacaagcggagaaagaaaaa
gaagagtataaggaagccggcatgttccgcctgccgaaaggaaaagcgatttcagagaat
ccgaaaccgatcgtctcagaatggaaaagcccgaaaaaagtgcctgcggccgaaccgttt
tcaccaacatccgaggcggctgatacatctttgttccccggcatcggcctgaaccgtgaa
cagatgaaggcagttactgaaacggacgggcctttattagtgcttgccggagcgggaagc
ggaaaaacaagggtgctgacagcacgcgccgcccatatgattgaacacctcggcatttca
cctgagaatatgctgcttgtgacctttacgacaaaagccgtcgccgaaatgaaagagcgg
atggcaaatgagtacggtctggcagccggaaaagtctcccgtctcgtgaccggaacattc
cacagttttttctataaaatactctgtcattatgattcttcaaaatggaacggcagccag
cttttaaaaatggagtggcaaaaagagcaatatgtgaaaaaggcgctctatgaagaaaac
ttggatgaaaaagagtttcccgtcgaccaggcgcttcagcttatcggctgctggaaaaac
acgtatctcccccatgagaccattccgcttgcggacgactgggagaaaaaagtgtacagg
ctctacgaacattacgaacggcagaagcgggaaaaacggcaatttgattttgatgacatg
gcccaaggctgttatgaactgtttcaaagccggcctgatattctcgcgcagtaccaaaac
agattttctcatattttgattgatgaatttcaagatatcaatcctgtccagtacaacatt
atgcaaatgatcgcaagcccagagaataacctgtgctgcgtgggtgatgacgaccaatcc
atttatgcgttccgcggcagcagcccgtctttcattttagattttcagaaagattatccg
gcagcaaagaccatttacttaacggcaaattaccgctcgccgcatccgatcgtctcaagc
gctcatgccgtcgtaaagaaaaataaaaaacggtatgaaaaaacactttctgccgtcaaa
gacggcgttcacaatcccgtgatgttttatccttacgatgaagaagaagaagcgaccatg
atcgtttcggatatgaaagagaaaattcaaaacggggcgagtcctgacgattttgccgtg
ctttaccggacaaacagcgccggacgggccatttatgaaagactgcaccaatcatcgatt
ccttatcatgccgaccggggcgtgcagacgttctacagccgcagaatcgtacgccagatc
ctcgcctacttatatgcgagtcagaatgaagatgatccggatgcggtgaaagacctgctg
cccgccttatttttaaagcaatccgccctgcaaacgttaaaggcgctgtcaattactgaa
gattgcacgatgattaaggcactgacgaaactgcctgacctgaagccttttcaaataggg
aagatcaagcagatcgttccgtttttcgcaagcatccggacaatgaagccgattgaagcc
atcacctttgcagaaagcaaaatgggtttttccgagtatttaaaaaaacggggcaatgag
ggaaacaaactggaaaaaggctctgatgatctcagggatgtcaaagtggccgccaaaaaa
ttcaaaaccattcccgattttcttgcgcatgtcgatcatatgcgcgccgctgagaatctg
aaaaccgatgaaaacggcgtcgaactgctgaccattcaccgctctaaaggtcttgaattc
aatacggtctatattttaggcgcggctgacggctcgatcccccatgacttcgcacttgag
acggcgagacagggcgatcccgctccgctcgaagaagaaagacggcttctgtatgtcgca
atgacaagggccatgcagcatttatatgtatcttgtcccgcgtacaggcggggaaaaaca
gcgcgcagctcaagatttctcgagccccttcttcggacggacagacggagcgcactcagg
atataa
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