Bacillus velezensis UCMB5113: BASU_2031
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Entry
BASU_2031 CDS
T02796
Symbol
rpfA
Name
(GenBank) RNA degradation presenting factor (ribosomal protein S1 homolog)
KO
K02945
small subunit ribosomal protein S1
Organism
bamn
Bacillus velezensis UCMB5113
Pathway
bamn03010
Ribosome
Brite
KEGG Orthology (KO) [BR:
bamn00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
BASU_2031 (rpfA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
bamn03011
]
BASU_2031 (rpfA)
Ribosome [BR:
bamn03011
]
Ribosomal proteins
Mitochondria/ Chloroplast
Small subunit
BASU_2031 (rpfA)
Bacteria
BASU_2031 (rpfA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
S1_RRP5
Spt6_S1
OB_RRP5_4th
EXOSC1
S1_2
RRP4_S1
DUF5335
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
CDG26323
LinkDB
All DBs
Position
complement(2184105..2185253)
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AA seq
382 aa
AA seq
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MTEEMNQIDVQVPEVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSSLHVEKASDV
VKVDDELDLKVTKVEDDALILSKRAVDADRAWEDLEKKFDTKEVFEAEVKDVVKGGLVVD
IGVRGFIPASLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHD
FLQTLEVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKVK
VLSVDRDNERISLSIKETLPGPWSQVGEKVKQGDVLEGKVQRLVSFGAFVEILPGVEGLV
HISQISNKHIGTPHEVLEEGQTVKVKVLDVNESEERISLSMRELEEAPKADQEDFRQYQA
KEEPSTGFQLGDLIGDKLNKLK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggaaatgaatcaaattgatgttcaagtgccagaggttggagatgtagtaaaa
gggattgtgacaaaggtagaggacaagcatgtagatgtcgaaattgtcaatgtcaaacag
tccggaatcattccaatcagtgaattatcaagtcttcatgtagagaaagcatcggatgtc
gtaaaagttgacgacgagcttgacctgaaagtaacaaaagtggaagacgatgctttgatt
ttatctaaacgtgccgttgatgctgaccgcgcttgggaagaccttgaaaaaaaattcgac
acaaaagaagtgtttgaagctgaagtgaaagatgtggtgaaaggcggtctcgtcgttgat
atcggcgttcgcggcttcattcccgcatcacttgtcgaagctcatttcgtcgaggatttc
actgactataaagggaaaaccctctctcttatcgtcgttgaactcgaccgtgataaaaac
cgggtgattctgtcacaccgggctgtagtggaaaaagaacagacagccaaaaagcatgat
tttctccaaacgcttgaggttggaagcgtgcttgaaggaaaagtgcagcgtctgactgat
ttcggcgcatttgtcgacatcggcggaattgacgggcttgttcatatttcgcagctgtct
cattcacacgtcgaaaaaccgtctgacgtggtggaagaaggtcaggacgtaaaagtgaaa
gtactgtccgtagaccgcgataacgagcgtatttctttatctattaaagaaacgctgccg
ggaccttggagccaggtcggcgaaaaggtaaaacaaggagatgtgcttgaaggaaaagtg
cagcgccttgtaagcttcggcgccttcgttgaaattcttccgggcgtggaaggacttgtg
cacatttcgcaaatttccaataaacatatcggaacgccgcatgaagtgcttgaagaagga
cagactgttaaagtgaaagtgcttgacgtgaacgaaagcgaagagcgcatttccttaagc
atgcgtgagcttgaagaagcgccgaaagccgatcaggaggacttccgccaataccaggcg
aaagaagagccgagcaccggcttccagcttggcgatttaatcggagacaagcttaataaa
ttaaaataa
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