Bacillus velezensis AS43.3: B938_07430
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Entry
B938_07430 CDS
T02382
Name
(GenBank) hydroxyacylglutathione hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bamp
Bacillus velezensis AS43.3
Pathway
bamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B938_07430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamp03019
]
B938_07430
Messenger RNA biogenesis [BR:
bamp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B938_07430
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF5548
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AFZ90510
LinkDB
All DBs
Position
complement(1449000..1450667)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYL
VKNEDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLAIGLLRNKLEEHGLLRQTKLN
IIGEDDIVKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEVPDFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VIEAAVLNGRKVAVFGRSMESAIEIGQNLGYITCPKNTFIEHNEINRMPANKVTILCTGS
QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSRTINQLYRAGAEVIHGSL
NDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLATDCGIPEENCFIMDNGE
VLALKGEEAAVAGKIPSGSVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSINMDDFKV
SAGPDLISRGFVYMRESGDLINDAQQLISNHLEKVMDRKTTQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgaccagactgccgttttcgccctcggcggattgggcgagatc
gggaaaaatacgtacggggtgcagtttcaggatgaaattgtactgattgatgcgggaatc
aagttcccggaagatgaacttctcggcattgattacgtaatccccgattacacgtattta
gtaaaaaatgaagataaaattaaaggtctgtttatcacccacggtcacgaagaccatatc
ggcggtattccgtacctgctcagacaagtaaatattcccgtttacggcggtaaactcgcg
atcggcttacttcggaataaacttgaagagcacgggctgttaagacagaccaaattaaac
atcatcggtgaagacgacatcgtgaagttccgcaagacgtcagtatccttcttcagaacg
acacacagcattccggattcatacggaatcgtcgtcaaaacaccgccgggcaatatcgta
cataccggggactttaagttcgatttcacaccggtaggcgaaccggcaaacttgacaaag
atggctgaaatcgggaaagaaggcgttctgtgcctgctttctgacagtacaaacagtgag
gttcctgatttcaccatgtcagaacgccgcgtaggcgaaagcattcacgatattttccga
aaagtggacggcagaattatatttgcgacattcgcttcgaatatacaccgtcttcagcag
gtgattgaagcagccgttttaaacggcagaaaagttgccgtattcggacgcagtatggaa
tcggctattgaaatcggacaaaatctcggttacattacctgtcctaaaaatacgtttatt
gagcataacgaaatcaatcgtatgcctgccaataaggtaacgattttatgtacgggaagc
caaggtgaaccgatggcggcgttatcacgcatcgctaacgggacgcaccggcagatttcc
attaatcccggagatacggtcgtcttttcttcctctccgattcccggaaacacaatcagc
gtaagccgcaccatcaaccagctgtaccgtgcgggcgcagaagtcattcacggttcattg
aatgacattcatacatccggacacggcggacaggaagagcagaaattaatgctccgcctg
atcaaaccgaagttctttatgccgattcacggtgagtacagaatgcagaaaatgcacgtc
aaactcgcgactgattgcggcatacccgaagaaaactgctttatcatggataatggcgaa
gtgctggccctcaaaggcgaagaagccgctgtggcaggcaaaattccgtccggctccgtt
tacattgacggaagcggaatcggtgatatcggcaatatcgtgctccgcgaccgccgcatt
ctttcagaagaaggccttgttatcgttgttgtcagcatcaatatggacgactttaaggtt
tcggcggggcctgatttaatctcaagaggttttgtatacatgagagaatccggtgatttg
atcaatgacgcgcagcagctgatttcgaaccatctggagaaagtaatggatcggaaaaca
acgcagtggtccgaaattaaaaacgaaattaccgatacgcttgctccgttcctatacgaa
aaaacaaaacgccgcccgatgatccttccgatcattatggaggtctaa
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