Bacillus velezensis AS43.3: B938_18565
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Entry
B938_18565 CDS
T02382
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bamp
Bacillus velezensis AS43.3
Pathway
bamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B938_18565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamp03019
]
B938_18565
03009 Ribosome biogenesis [BR:
bamp03009
]
B938_18565
Enzymes [BR:
bamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B938_18565
Messenger RNA biogenesis [BR:
bamp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B938_18565
Ribosome biogenesis [BR:
bamp03009
]
Prokaryotic type
rRNA helicases
B938_18565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
SWI2_SNF2
UvrD-helicase
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFZ92711
LinkDB
All DBs
Position
complement(3759845..3761284)
Genome browser
AA seq
479 aa
AA seq
DB search
MNEFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI
CELAEWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQK
SHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTML
FSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENP
DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVA
ARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGRAVTFVTPSESRFLNDIETYIG
FRIQKREAPSEKETAERKAAFAEKLNARPDVKTDKSEQLNKDIMKLYFNGGKKKKLRAVD
FVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLDIMKNTTVKGKKLKVHKAKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtttaatgaatatgcgatcagccccgaaatccgacgggcgctgaatggcttg
caatacaccgagccgactgaagtgcagcggcgcgtcatccccgccgcgctgcaaaaaaaa
gacctcgtcgtcaaatcacagacgggcagcggcaaaaccgcagctttcggcattccgatc
tgtgagcttgcggaatgggaggaaaacaaaccgcaggcgctgattttaacgccgacccgc
gagcttgcggcgcagattaaagaagatatcacgaatatcggccgtttcaaacggataaaa
gccacggcggttttcggaaaagcttcttttgacaaacagaaaaccgaactgaagcaaaaa
agccacgtcgttgccggaacgccggggcgtgtgcttgatcatatagaaaaagggacgctg
ccgcttgaacggctggcgtatgtagtgattgacgaagcggatgaaatgctgaatatggga
tttattgaacaggtggaagccatcattcagcatctgccgaaaaacagagtcaccatgctg
ttttcagcgacgctgccggatgacgtcgagaagctgagccgcacatatatgaaagaccct
gaattgattgaagtaaaagcggaaggcctgacgacaaaagacattgagcattttgtcacc
agaacagaagaagaggacaaaacatctttgctgcgtgatgtcctgatcaccgaaaacccg
gacagctgcatcatattctgccggacaaaagaaagagtcatccagttaaccgatgagctg
gacaggctgggctacccttgcgataaaattcacggcggcatggtgcaggaagaccgcttt
gacgtcatgaatgaattcaagcgcggcgagttccgctatctcattgcgaccgatgttgcc
gccagaggaattgatattgaaaacatcagcctcgtcatcaattatgatattccgcttgaa
aaagaaagctatgtgcaccgcaccggcagaacgggccgcgccggacaccgcggacgggcc
gttacgtttgtgacgccgtctgaatcgcggtttctgaatgacattgagacatatatcggt
tttcgcatccagaagcgggaggcgccgtccgagaaagaaacagcggaacggaaagcggct
tttgcggaaaaattgaacgcccgccccgatgtcaaaacagacaaaagcgaacagttaaac
aaagacatcatgaagctgtactttaacggcgggaaaaagaaaaaactcagagcggtcgat
tttgtcggaacgattgcgaaaatcgacggcgtttcagccgatgatatcgggattatcacg
attttggacaacgcatcgtacgtcgagattctgaacggcaaaggcccgcacgttcttgac
atcatgaaaaatacaacggtcaaaggcaaaaaactgaaagtccataaagccaagaaataa
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