Bacillus velezensis TrigoCor1448: AJ82_17465
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Entry
AJ82_17465 CDS
T03161
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bamt
Bacillus velezensis TrigoCor1448
Pathway
bamt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AJ82_17465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamt03019
]
AJ82_17465
03016 Transfer RNA biogenesis [BR:
bamt03016
]
AJ82_17465
Enzymes [BR:
bamt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AJ82_17465
Messenger RNA biogenesis [BR:
bamt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AJ82_17465
Transfer RNA biogenesis [BR:
bamt03016
]
Prokaryotic type
tRNA degradation factors
AJ82_17465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
TFIIE_beta
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
AHK50583
LinkDB
All DBs
Position
complement(3239249..3241582)
Genome browser
AA seq
777 aa
AA seq
DB search
MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEADEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
HSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctcgcgtttatgaaggaagaggcgtacaag
ccccttaccgttcaggaactcgaggagatgctgaacatcacggaagcagatgaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggacagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgca
aagggattcgcgtttctattgccggaggatacctctttaagcgatgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggttcggctcaattcccagtca
agcggatcgagacaggaaggcacggtcatccgcatcttggaaagaagcatcgaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggctttgtcatcccggatgataagaaaatc
acgagtgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtcaaactgacaagctaccctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgatccgggcatcgatattttatcaatcatccataagcacggc
ctgccgggagattttccggctgaagcgatggagcaggcaacaagtacgccggataccatc
gatgaaaaagacatcaaagaccgccgtgatctccgcgatcaggtcattgtcaccattgac
ggtgcggatgcgaaggatctggatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgcggacgtcagccattacgtcacggagaattccccgatt
gacaaagaagcgctggaaagagggacaagcgtgtacttggttgaccgggtcattccgatg
attccgcacagactgtctaacggaatctgttctttaaatccgaaggtcgaccggctgacg
ctttcctgcgaaatgacaatcaaccagcaggggcaggtaacagagcacgagatcttccaa
agcgtcattaaaacgacggaaagaatgacctattcagatgtcaaccggatcctcacagaa
gacgacgccgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgtctggccgaaattctccgagcgaaacggatggaccgcggcgccgtggattttgatttc
aaagaggcgaaagtgctcgtcgatgaggaaggcgccgttaaagacgtcgtcatcagagag
cgctcagtagcggaaaagctgattgaagaattcatgcttgtcgcaaacgaaacggtggcc
gagcacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgcc
gaaaaactgcaaaagttcttggagttcgtcacgacattcggttatatcgttaaaggaaaa
gccggagacattcatccgcgcgcgctgcaaagcattcttgatgaagtgcgggaccgtccg
gaagaaacggtgatttcaaccgtcatgctccgttccatgaagcaggcgaaatacgacccg
cacagcttgggccatttcgggctggcgactgaattttatacgcacttcacatcgccgatc
cgccgctatcctgacttaatcgttcacaggctgatcagaacgtatttgatcaacggacaa
tcggacgaagcgactcaagaaaagtgggccgaacgccttccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgatgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggaatttgacggcatgatcagttccgtcacgaat
ttcggaatgtttgtcgagctgccgaatacgattgaaggtcttgtgcacgtcagctttatg
acggatgattattaccgttttgacgagcagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggagatgaaatcacggtcaaagtcgtcgacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacgaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgtgtgttaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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