Bacillus velezensis SQR9: V529_11330
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Entry
V529_11330 CDS
T03384
Symbol
yjcD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bamy
Bacillus velezensis SQR9
Pathway
bamy03420
Nucleotide excision repair
bamy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bamy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V529_11330 (yjcD)
03430 Mismatch repair
V529_11330 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamy03400
]
V529_11330 (yjcD)
Enzymes [BR:
bamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V529_11330 (yjcD)
DNA repair and recombination proteins [BR:
bamy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V529_11330 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
V529_11330 (yjcD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
zf-KKT2_KKT3
CoiA_N
DUF7828
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHZ15159
LinkDB
All DBs
Position
complement(1190702..1192987)
Genome browser
AA seq
761 aa
AA seq
DB search
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCDQPVLMRLSILEQPAFYHRQKG
DFTACEKACAAEEPQAEKEKEEYKEAGMFRLPKGKAISENLKPIVSEWKSPKKVPAAEPF
SPTSEAADTSLFPGIGLNREQMKAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
PENMLLVTFTTKAVAEMKERMANEYGLAAGKVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQKEQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
LYEHYERQKREKHQFDFDDMAQGCYELFQSRPDILAQYQNRFSHILIDEFQDINPVQYNI
MQMIASPENNLCCVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
AHTVVKKNKKRYEKTLSAVKDGVHNPVIFYPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDPDAVKDLL
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
KTDENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPAYRRGKTARSSRFLEPLLRTDRRSALRI
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaataaccgaacgatacatttacatacatattccagagaacat
taccaattcctttttgaagaagctcaaaaaggaaatattttttgcgcacattgtgaccag
cccgtcttgatgcggctttcgattttagagcagccggcattttatcaccgacaaaaggga
gactttaccgcctgtgaaaaagcatgcgcggccgaggaaccgcaagcggagaaagaaaaa
gaagagtataaggaagccggcatgttccgcctgccgaaaggaaaagcgatttcagagaat
ttgaaaccgatcgtctcagaatggaaaagcccgaaaaaagtgcctgcggccgaaccgttt
tcaccaacatccgaggcggctgatacatctttgttccccggcatcggcctgaaccgtgaa
cagatgaaggcagttactgaaacggacgggcctttattagtgcttgccggagcgggaagc
ggaaaaacaagggtgctgacagcacgcgccgcccatatgattgaacacctcggcatttca
cccgagaatatgctgcttgtgacctttacgacaaaagccgtcgccgaaatgaaagagcgg
atggcgaatgagtacggtctggcagccggaaaagtctcccgtctcgtgaccggaacattc
cacagttttttctataaaatactctatcattatgattcttcaaaatggaacggcagccag
cttttaaaaatggagtggcaaaaagagcaatatgtgaaaaaggcgctctatgaagaaaat
ttggatgaaaaagagtttcccgtcgaccaggcgcttcagcttatcggctgctggaaaaac
acgtatctcccccatgagaccattccgcttgcggacgactgggagaaaaaagtgtacagg
ctctacgaacattacgaacggcagaagcgggaaaaacaccaatttgattttgatgacatg
gcccaaggctgttatgaactgtttcaaagccggcctgatattctcgcgcagtaccaaaac
agattttctcatatcttgattgatgagtttcaagatatcaatcctgtccagtacaacatt
atgcaaatgatcgcaagcccagagaataacctgtgctgcgtgggtgatgacgaccaatcc
atttatgcgttccgcggcagcagcccgtctttcattttagattttcagaaagattatccg
gcagcaaagaccatttacttaacggcaaattaccgatcgccgcatccgatcgtctcaagc
gctcataccgtcgtaaagaaaaataaaaaacggtatgaaaaaacactttctgccgtcaaa
gacggcgttcataatcccgtgatattttatccttacgatgaagaagaagaagcgaccatg
attgtttcagatatgaaagagaagattcaaaacggggcgagccctgacgattttgccgtg
ctttaccggacaaacagcgccggacgggccatttatgaaagactgcatcaatcatcgatt
ccttatcatgccgaccggggcgtgcagacgttctacagccgcagaatcgtacgccagatc
ctcgcctacttatatgcgagtcagaatgaagatgatccggatgcggtgaaagacctgctg
cccgctttatttttaaagcaatccgccctgcaaacgttaaaggcgctgtcaatcacggaa
gattgcacgatgattaaggcactgacgaaactgcctgacctgaagccttttcaaattggg
aagatcaagcagatcgttccgtttttcgcaagcatccggacaatgaagccggttgaagcc
atcacctttgcagaaagcaaaatgggtttttccgagtatttaaaaaaacggggcaatgag
gggaacaaactggaaaaaggctctgatgatctcagggatgtcaaagtggccgccaaaaaa
ttcaaaaccattcccgattttcttgcgcatgtcgatcatatgcgcgccgctgagaatctg
aaaaccgatgaaaacggcgtcgaactgctgaccattcaccgctctaaaggtcttgaattc
aatacggtctatattttaggtgcggctgacggctcgatcccccatgacttcgcgcttgag
acggcgagacagggcgatcccgctccgctcgaagaagaaagacggcttctgtatgtcgca
atgacaagggccatgcagcatttatatgtatcttgtcccgcgtacaggcggggaaaaaca
gcgcgcagctcaagatttctcgagccccttcttcggacggacagacggagcgcactcagg
atataa
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