Bacillus velezensis SQR9: V529_15880
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Entry
V529_15880 CDS
T03384
Symbol
sigD
Name
(GenBank) RNA polymerase sigma factor SigD
KO
K02405
RNA polymerase sigma factor FliA
Organism
bamy
Bacillus velezensis SQR9
Pathway
bamy02020
Two-component system
bamy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bamy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
V529_15880 (sigD)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
V529_15880 (sigD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bamy03021
]
V529_15880 (sigD)
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
bamy02035
]
V529_15880 (sigD)
Transcription machinery [BR:
bamy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
V529_15880 (sigD)
Bacterial motility proteins [BR:
bamy02035
]
Flagellar system
Flagellar assembly proteins
Stator
V529_15880 (sigD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
MarR_2
UPF0122
IF2_N
UPF0175
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
AHZ15614
LinkDB
All DBs
Position
1655753..1656517
Genome browser
AA seq
254 aa
AA seq
DB search
MQSLNYEDQVLWSRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSVHKDDLMSLGM
LGLYDALEKFDPGRDLKFDTYASFRIRGAIIDGLRKEDWLPRTSREKTKKVEAAIEKLEQ
RYLRNVTPSEIAEELGMTEQDVVSTMNEGFFANLLSIDEKLHDQDDGENIQVMIRDDKNV
PPEEKIMKDELIAQLAGKIHELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSK
ALFKLKHLLEKVIQ
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccttgaattatgaagatcaggtgctttggtcgcgctggaaagagtggaaagat
cctaaagccggtgatgatttaatgcgccgttacatgccgctggtcacatatcatgtcggc
agaatttccgtcggactgccgaaatcggtgcataaagacgatctaatgagccttggtatg
cttggtttatatgatgccctggaaaaatttgaccccggccgggatttaaaatttgatacc
tatgcctcgtttagaattcgcggtgcaatcatcgacgggctgcgtaaagaagattggctg
cccagaacttcacgggagaagacaaaaaaagtcgaagcggcgatcgaaaaacttgaacag
cgctaccttcggaatgtgacgccttcagagatcgcagaagagctggggatgacggagcag
gacgtagtatcaacgatgaatgaagggttttttgccaatctcttatccattgatgaaaag
cttcacgaccaggatgacggtgagaatattcaagtgatgatcagagatgacaaaaatgtg
ccgccggaagaaaaaatcatgaaggacgagctgatcgctcagcttgcgggcaaaattcac
gagctctctgaaaaagagcagcttgtcgtcagtttattctataaagaagaactgactttg
accgaaatcggacaagtcctgaacctttcgacgtcgcggatttcacagattcattcaaag
gcgctgtttaaattaaagcacctgcttgaaaaagtaattcaataa
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integrated database retrieval system
