Bacillus velezensis SQR9: V529_19230
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Entry
V529_19230 CDS
T03384
Symbol
yocI
Name
(GenBank) putative ATP-dependent DNA helicase YocI
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bamy
Bacillus velezensis SQR9
Pathway
bamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V529_19230 (yocI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamy03019
]
V529_19230 (yocI)
03400 DNA repair and recombination proteins [BR:
bamy03400
]
V529_19230 (yocI)
Enzymes [BR:
bamy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V529_19230 (yocI)
Messenger RNA biogenesis [BR:
bamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V529_19230 (yocI)
DNA repair and recombination proteins [BR:
bamy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
V529_19230 (yocI)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHZ15949
LinkDB
All DBs
Position
complement(2083109..2084887)
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AA seq
592 aa
AA seq
DB search
MLDKAQSLLAHYFGYDSLRAGQKQAIQSVAEERKNTVCIMPTGGGKSICYQIPALLFEGT
TIVISPLISLMKDQVDALEEAGIAAAYINSTQTSRDIHERLTGLKQGAYRLFYITPERLT
SSEFIHILQNITVPLVAIDEAHCISQWGHDFRPSYRNIEILFNELKEPPVIIALTATATP
EVHDDICKQLHIKKEQTVYTGFARENLTFKVVKGENKDRFIERYLEKNKHEAGIIYTATR
KETDRLYEKLKRSGINAGRYHGGLADDDRKDQQERFLNDQIQVMVATSAFGMGIDKSNIR
FVLHAQIPKDMESYYQEAGRAGRDGLNSECVLLFSPQDIMVQRFLIDQSAAGEEKQKQDL
KKLRQMVDYCHTEDCLQRFILKYFGENEAEACEACGNCTDTRTAHDVTKEAQMVLSCIIR
MNERFGKTMVAQVLSGSKNKKVLENGFSRLSTYGIMKHQSAAEISDFIEFLISDEYIRMA
DGTFPTLMVTQKGRDVLLGKSAVARKEALQAAAVTENDELFELLRRLRKEIAAEQGVPPF
VVFSDQTLKEMSAKLPKTDQDLLSVKGVGEQKRLKYGAVFLEEIRNYVRETE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgctggataaagcccaatcccttctggcgcattattttggctacgacagtcttcgcgcg
ggccaaaagcaggcgatacaatcagttgcagaggagagaaaaaacacggtctgcattatg
ccgacggggggcggaaaatcaatctgctatcagattcccgcactgctgtttgaaggaacc
acaatcgttatttcccctcttatttccttaatgaaagaccaagtcgacgcgcttgaagaa
gcgggtatcgcggcagcttatattaacagcacccagacaagccgtgacattcatgagcgc
ctgaccggtttgaaacaaggggcttaccggctcttttacatcacaccggagcgtttgact
tcttctgaattcattcacatcctgcagaatattacggttcctcttgtcgccattgacgaa
gctcactgtatatcgcaatggggacatgatttcaggccgagttaccggaatatcgaaatc
ctttttaatgaattaaaagaaccgcccgtcatcatcgcattaacggcgacggctacgcct
gaggttcatgatgacatctgcaagcagcttcatattaagaaagaacaaactgtatatacc
ggttttgccagagagaatttaacgtttaaagtagtaaagggcgaaaacaaagaccggttt
atcgagcggtatctggaaaaaaataaacacgaagccggcattatatatacagcgacaaga
aaagaaaccgaccgtttatatgagaaattaaaacgcagcggcatcaatgccggccgttat
cacggcggattggcggatgatgacagaaaagaccaacaggagcggtttcttaacgatcag
atacaagtgatggtagctacgtccgctttcggaatgggaatcgataagagcaacatcagg
ttcgttttacacgcgcagattccgaaagatatggagagctattaccaggaagccggacgg
gccgggcgcgatggccttaacagcgagtgtgtgctcttattttcgccgcaggatattatg
gtgcagcgttttttaatagaccaatcggccgccggagaagaaaaacaaaagcaggatctc
aaaaaactgagacagatggtggattactgtcatacggaagattgcctgcagcggtttatt
ctgaagtatttcggcgagaatgaggcggaagcttgcgaagcatgcggcaattgcactgat
acaaggaccgcccatgacgtcacaaaagaagcgcagatggtattatcatgcatcatcaga
atgaatgagcgtttcggaaaaacgatggtggcgcaggtgcttagcgggtctaaaaataaa
aaagtgctggaaaacggcttcagcaggctgtccacttacggcattatgaagcatcaatcc
gcagcggaaatcagtgattttatcgaattccttatttcagatgaatatatcagaatggcg
gacggcacatttccgacgcttatggttacccaaaaaggcagggacgttctgcttggaaaa
agcgcagtcgcgagaaaagaagccttacaggccgccgccgttaccgaaaatgatgaatta
tttgagcttctccggcgtctccgcaaagagattgcagctgaacagggtgtgcctccattt
gtcgtgttctcagatcagacgttaaaagaaatgtcggcgaaacttccgaaaacggatcag
gatcttctttccgtaaaaggggtcggggaacaaaaaagattgaaatacggagcggttttt
ttagaagaaatccgaaattatgtaagagaaacagagtga
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