Candidatus Bipolaricaulis anaerobius: BARAN1_0885
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Entry
BARAN1_0885 CDS
T05525
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bana
Candidatus Bipolaricaulis anaerobius
Brite
KEGG Orthology (KO) [BR:
bana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bana03016
]
BARAN1_0885 (rtcB)
Enzymes [BR:
bana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BARAN1_0885 (rtcB)
Transfer RNA biogenesis [BR:
bana03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BARAN1_0885 (rtcB)
Prokaryotic type
tRNA splicing ligases
BARAN1_0885 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
SQD92909
UniProt:
A0A2X3L148
LinkDB
All DBs
Position
BARAN1:877257..878723
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AA seq
488 aa
AA seq
DB search
MELKRIGDFAWELPRAGEMRVPGWIFVSEELLRPLLSGTEGGEDEGGGHEWNALVQVRNV
ACLPGIVTASIAMPDIHPGYGFPIGGVGAFDPDGGVVAMGGVGFDINCGVRVLTTPLSRS
DVEDRKEEVADSLFAHVPAGLGSEGKIRLTLNGVDEVLKKGAAFALERGYGLPEDLMYIE
ENGRMDGADPGAVSARAKEREFRQIGTLGSGNHYLEVQYVEEIADRAAARAYGLEEDQIL
VAIHCGSRGLGHQIGQDALPELERASRKYGIPIRERELVCAPIRSPEGGKYLAAVFAGIN
CAFANRQVIAHLVREVLAPLFSLPHGAIRTLYDVGHNNVKFERHRVDGEERTLLVHRKGS
TRAFGPGRRENPDRYRAVGHPIFVGGTMGTASYILRGTEVGMEKAFGSGIHGAGRAMSRA
KAKKRWRGQELVQDLAKQGITVRAHSYAGAAEEAPGAYKDVDLVVEAAVGAGLNALVAKV
RPLVCIKG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaagaggatcggcgacttcgcatgggagctcccccgggccggggagatgcgg
gtcccggggtggatcttcgtctcagaggagctcctccggcccctcctctccggaacggag
ggaggggaggacgagggaggcgggcacgagtggaacgcgctcgtccaggtgaggaacgtg
gcctgcctccccgggatcgtgacggcctcgatcgccatgcccgatatccaccccggctac
gggttccccattggaggggtcggcgcgttcgaccccgatgggggggtggtggcgatgggc
ggggtcgggttcgacatcaactgtggggtacgggtcctgacaacccccctctcccgatcc
gacgtcgaggaccggaaggaggaagtggccgattccctgttcgcccacgtcccagcgggc
ctcgggtcggaggggaagatccgcctcaccctgaacggggtggacgaggtgctcaagaag
ggggctgccttcgccctcgaacgcgggtacgggcttcccgaggatctcatgtacatcgag
gagaacgggcggatggacggcgccgatcccggtgccgtatccgcgagggccaaggagcgg
gagttccgccagatcgggacgttgggctcggggaaccactacctcgaggtccagtacgtg
gaggagatcgccgaccgcgcggcggcccgcgcctatggtctggaagaggatcagatcctc
gtcgcgatccactgcggctcgcgggggctggggcatcagatcggacaggacgcgctcccc
gagctggagcgggcgagccgcaagtacgggatcccgatccgggagcgggagctcgtgtgc
gctccgatccgctcccccgagggggggaagtacctcgcggcggtgttcgcggggatcaac
tgtgcctttgccaaccgccaggtcatcgcccacctcgtgcgggaggtcctcgcccccctg
ttctcgctcccccatggggcgatccgcaccctgtacgacgtggggcacaacaacgtcaag
ttcgagcgccaccgggtggacggggaggagcggacgctcctcgttcaccgcaagggctcc
acgcgcgccttcggccccggacggagggagaacccagatcggtaccgggccgtgggtcac
ccgatcttcgtaggagggacgatgggcaccgcctcctacatcctccgagggacggaagtg
gggatggagaaagcattcgggtccgggatccacggggcagggcgggcgatgtcccgcgcc
aaggccaagaagcgctggcggggccaggagctcgtccaggacctggccaagcaggggatc
accgtccgcgctcattcctatgcgggggcagcggaggaggcgcccggcgcgtacaaggac
gtggacctcgtggtggaagcggcggtgggggcggggctcaacgcgctcgtggccaaggtc
cggccgcttgtgtgcatcaaggggtga
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