Candidatus Bipolaricaulis anaerobius: BARAN1_0890
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Entry
BARAN1_0890 CDS
T05525
Name
(GenBank) Formamidopyrimidine-DNA glycosylase (modular protein)
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bana
Candidatus Bipolaricaulis anaerobius
Pathway
bana03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BARAN1_0890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bana03400
]
BARAN1_0890
Enzymes [BR:
bana01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BARAN1_0890
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BARAN1_0890
DNA repair and recombination proteins [BR:
bana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BARAN1_0890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Zn_ribbon_8
DZR
RNHCP
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
SQD92914
UniProt:
A0A2X3MLV4
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All DBs
Position
BARAN1:882606..883442
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AA seq
278 aa
AA seq
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MPELPDLEVVRDILSPRIVGQAVRGVEVNRPDLLRTGEGSVSLLVRKELHAIGRRGKYLL
FSFGPEAHLLVHLMRWGWLWHGPHGYTPTTATQLRLMFDDGSDLRLIEARSPYLAAAWVV
PDPKTAEPLRGLGVEPLSAEFTPEVLRHLIAGKRRPLKRFLTDQSLIAGIGNAYADEILF
RARLSPVRYTHTLTEDELDRLWHAIGEALRWAIREIRARVGDVLFDREVRDFLFVHGKKG
DPCRECGTPIAEILFEDARTNYCPRCQGPRVAPPLRRG
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
ttgccggagctcccggatctggaggtcgtgcgggacatcctctccccccggatcgtgggg
caggcggtccggggggtggaggtcaaccgtcccgatctcctccgcaccggggagggaagt
gtatccctcctcgtaaggaaggaactccacgcgatcgggcggcggggaaagtacctcctc
ttctcgtttgggccggaggctcacctcctcgttcacctcatgcgctggggatggctgtgg
cacggtccgcatgggtacacgccgaccacggcgacccagctccggctgatgttcgacgat
gggtccgatctccgccttatcgaggcgcggtcgccgtacctggcggcggcgtgggtggtt
cccgatccgaagaccgctgagccgttgcggggcctcggcgtggagcccctgtccgctgag
ttcaccccggaggtcctgcgccacctcatcgcggggaagcgccggcctctgaagcggttc
ctcacggaccagtcgctgatcgccgggatcgggaacgcctacgcggacgagatcctgttc
cgggctcggctatccccggtccgctacacccataccctgacggaggacgagctcgaccgt
ctgtggcacgcgatcggggaggccctgcgctgggcgatccgcgagatccgggcgcgggtg
ggggacgtactgttcgatcgtgaggtgcgcgacttcctcttcgtgcacggaaagaagggc
gacccgtgtcgggagtgcgggaccccgatcgcggagatcctgttcgaggacgcccggacc
aactactgcccacgctgccagggcccacgcgtcgcccctccgctccgtcgcgggtga
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