Bartonella ancashensis: PU02_0987
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Entry
PU02_0987 CDS
T04086
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
banc
Bartonella ancashensis
Pathway
banc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
banc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PU02_0987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
banc03400
]
PU02_0987
Enzymes [BR:
banc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PU02_0987
DNA repair and recombination proteins [BR:
banc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PU02_0987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALE03801
UniProt:
A0A0M3T313
LinkDB
All DBs
Position
complement(1063308..1066799)
Genome browser
AA seq
1163 aa
AA seq
DB search
MSIFKKIVLPKNTRNLIIFDNVIDGTEAFALSQLCTEIFQGKPFVYVLRDETKITYLQKI
LNFIDPHLPVFNFPSWDCLPYDRVSPGILVTARRLSALTNILNLHKNPCSAIILTTANAI
IQKLPPRTIVENQAIHMRVGQCVDMNDIIHYLERNSFERVSIVRDVGEFAVRGGIIDIFP
PSESNPLRLDFFGNTLETVRTFDVETQRTIANKVEFSLQAMSEVVLTQELISRFKGNYIR
AFGVPQANDIVYEAISQGRRFSGMEHWLPLFYEKLDNFFDYCGDAPVVFENCIEEVLEKR
YDLIKDYYIARKEHEKDEASDVSYCPVNPDLLYMTPSQILVCRERLGLCMNFTPFNVPKS
FGKMIFHANVTAGYDFVKERNEKDKNVFSSVVDHIVSLQSLEKKVLLACWSEGSMNRLLQ
VLDEYGLKKIEIVHSFSTVKKAPYKHTLAAVIPIDHGFESEDFVVITEQDVLGDRLIRSS
KRRKNSAHFISEIAALNSGDFVVHIDHGIGQFVGLKTIKVDEILRDCLEIIYAGGDRLFL
PIENIELLSRYGSEGTGIVLDKLGGAAWQTRKARLKKHLLRSAEQLIRIAAERAMRSAPV
LIPPVGLFDEFIACFPHEETEDQISAIDAVLGDLASGKPMDRLICGDVGFGKTEVAMRSA
FVAALNGYQTAIVVPTTLLSRQHYKTFSSRFKGLPVKICHVSRLVQAKELLQSKKAIADG
TVDIVIGTHALLSEKINFLRLGLLVIDEEQHFGVKHKEYLKKLKSDIHVLTLSATPIPRT
LGLALSGLRELSLITTPPIDRMAVRTFISPFDALVVRETLLREYYRGGQSFYVCPRISDI
AYVEEYLKKYVSELKFVVAHGQMPAGQLDDIMNAFCDGKYDVLLSTTIIESGIDIPTANT
LIVHRAEMFGLSALYQLRGRVGRSKQRAYALFTFSAGRILNPAADRRLKALQSLDTLGAG
FQLASHDMDIRGTGNLLGEEQSGHVKEVGFELYQKMLEETITELKEGKCNVDGQWSPQIS
LGVTALIPEDFVPDLSLRISLYRRLMELSYLEKINELGSELIDRFGPLPIEVQYLLKMVY
IKALCRKTSVEKLDIGPKGIVIQFRNNHFNNTTDLVKWIGEQGTTAKIRSDQSIVFIRDC
STVEKRLLEAEAIMTDLSNMITE
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtctatatttaaaaaaattgttcttcctaagaatacgcgtaatttgattatttttgat
aatgtaattgatggaactgaagcctttgctctttcccaactatgcacagagattttccaa
ggaaaaccattcgtttacgtgcttcgtgatgaaacaaaaataacctatttgcagaaaatt
ttaaactttatagatccccatttgccagttttcaattttccttcgtgggattgcctaccg
tatgatcgtgtatcaccgggaattcttgtcacggcacgccgtctttcagctttgacgaat
atattaaatttgcataaaaatccatgttctgcaattatattgacaacagcaaatgctatc
attcaaaaattaccaccacgtacaatagttgaaaaccaagccatccatatgcgtgttggc
caatgtgttgatatgaatgatatcattcattacttagagcgtaatagctttgaacgtgtt
tctattgtgcgtgatgttggtgaatttgctgttagaggaggaattattgatatttttcct
ccaagtgaaagcaatcctttgcgtcttgatttttttggtaataccttagaaacagttcgc
acatttgatgtagaaacacaaaggacaatagcaaataaagttgagttttctttgcaggca
atgagtgaagttgttctcacacaagaactcattagtcggtttaagggcaattatattcgt
gcatttggtgtaccgcaggcgaatgacatagtttatgaggctatctctcaagggagacgt
ttctctggtatggagcattggttgccacttttttacgaaaaacttgataatttttttgat
tattgtggtgatgctcctgttgtttttgaaaattgcatagaagaagttttggaaaagcgc
tacgatcttattaaagattattatattgctcgcaaagaacatgaaaaggatgaggccagt
gatgtttcttactgtccagtaaatccagatcttctttacatgacaccaagtcaaatttta
gtatgcagagaacgattagggttgtgtatgaatttcacgcccttcaatgttccaaaatct
tttggaaaaatgatttttcatgcaaacgttacagcaggatatgattttgtaaaagagcgt
aatgaaaaagataaaaatgttttttctagtgtggttgatcatattgtttcacttcaatct
ttagaaaaaaaggtgcttttagcctgttggagcgaaggatctatgaatcgcctgctacag
gtccttgatgaatatgggttaaaaaaaatagaaattgttcattccttcagtactgtaaaa
aaagcaccatataagcatacattagctgctgttataccgattgatcatggttttgaatct
gaagattttgttgttataacagagcaagatgttcttggtgatcgcttaataagatcatca
aaaagacgcaaaaacagcgctcattttatttccgaaatagctgcattaaattctggagat
tttgttgtccatatagatcacgggatcgggcaatttgttggtcttaaaacaattaaggta
gatgaaattttacgcgattgtcttgaaattatatatgctggaggtgatcgattattttta
cctatcgagaatatcgagcttttatcacgctacggatcagaaggtacaggcatagtactt
gataaattagggggagctgcatggcaaacacgtaaagcgcgtcttaaaaaacatttgtta
agaagtgcagaacaattaatccgtattgctgcagagcgtgccatgcgttctgcgcctgtt
cttattcccccagtagggctttttgatgaatttattgcgtgttttcctcacgaagaaaca
gaagaccaaatcagcgcaattgatgcagtgttaggcgatttagcatcaggaaaaccaatg
gatagattaatatgtggcgatgttggttttgggaaaacagaagtcgccatgcgtagcgca
tttgttgctgcattaaatggctatcaaactgctatcgttgtaccgacaaccttgctttca
cgacagcattataagactttttcttcccgatttaaaggattaccagttaaaatctgtcat
gtttcaagattagtgcaggctaaggaattactacaaagtaaaaaggcaattgcagatggc
acagttgatattgttattggaacacacgcactattgagtgagaaaattaattttttacga
ttagggttactagttattgatgaagagcagcattttggcgtaaaacacaaagaatatttg
aaaaaacttaaaagtgatattcatgtactcacactttctgcgacacccataccacgaact
ttagggcttgctctatcaggattacgtgaactttcattaatcactactcctccaattgat
agaatggcagtccgcacttttatttcaccttttgatgcattggtggtacgtgaaacactg
cttcgtgaatattatcgtggaggacaaagtttttatgtttgtcctcgtatttctgatatt
gcatatgtagaagaataccttaaaaagtatgtgtctgagctaaaatttgttgtagcgcat
ggacaaatgccggctggacaactcgatgatatcatgaatgcgttttgtgatggcaaatat
gatgttttgctttcaacgactataattgagtcaggaattgatatcccaactgcgaacact
ttaattgtacatcgtgctgaaatgttcggtctttctgcactttatcaattacgaggcaga
gtagggcgttcaaaacaacgtgcttatgcgctttttactttttctgctggtagaattttg
aatcctgcggccgatcgtcgccttaaagctttgcaatctcttgatactttaggtgccggt
tttcaattagctagtcatgatatggatattcgtggtacaggtaatttactgggggaagag
caatcaggacatgtcaaggaagttggatttgaattatatcaaaaaatgcttgaagaaact
attactgaattaaaggaaggaaaatgtaatgtcgatggtcaatggtcacctcaaatttcg
cttggtgtaacagctcttataccagaagattttgttcctgatttatcattgcgtataagc
ctttaccgtcgtttaatggaacttagttatttagaaaaaatcaatgaattagggagtgaa
ttaattgaccgctttggtcctcttccaatcgaagtgcagtatcttctgaagatggtttat
atcaaggcactgtgtcggaaaacatctgtagaaaaattggatattggaccaaagggaatt
gttatccagtttcgtaataaccattttaataatactactgatcttgttaagtggattggg
gaacagggtacaactgcaaaaattcgttcagaccaaagtattgttttcattcgtgattgt
tcaacggtggaaaaaaggctgttggaagcagaggctattatgacagatctttcgaatatg
ataacggagtga
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