Borrelia anserina: N187_03070
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Entry
N187_03070 CDS
T04727
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bane
Borrelia anserina
Pathway
bane03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bane00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N187_03070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bane03400
]
N187_03070
Enzymes [BR:
bane01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N187_03070
DNA repair and recombination proteins [BR:
bane03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N187_03070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
TsaE
NdhM
DUF4191
Motif
Other DBs
NCBI-ProteinID:
APR65058
LinkDB
All DBs
Position
complement(645452..648820)
Genome browser
AA seq
1122 aa
AA seq
DB search
MNIEKEITVRLSENQNLKKIKQFIKNNIPFVITGHEGFFKAFLINKIKEYSKENKVILIV
KNENISSELKNDLMQITDQIYELNYFNSLTYKGISSKSKIFSERVKFLINFYENNSGIYI
VSLKSLLSKIPTKENLFNNIYKIHTGKIINIENLEINLIKLGYEKTTRVALPGEFTIKGT
TIDLYPFNKAQPIRISMHVDKIEEIKYFNPLTQLKQENEILEFDIIPTKEIIWNNESINI
LKQHIKENEYKKLFEQIQTKYNVRAEEMFYPLIGNTYLSQEINADIITINFEIPNLQAEI
KNIYKEYEKLYNQAIETGEKTIAPKKIFTNLNNLRLKTHILFAKTPAPTKTEEIIEFKIE
SECKCFSNIALAKEKIQNWLNNGFKVIIAAESNSQKEKLKYIFKELHQIKIEVLKISSSL
IINKEKIAIILESDIFNRIQKTNKAFESSKTKTIDSFIEIEKNSHIVHINHGIGIFRKIK
RIKTSLLEKDYIEIEYADNEKLFIPIEQTHLIQRYIGNETQNIKLDKISSKTWEKKKAYA
KKRIDAIADKLVSLYLERESTKGFQYPQDDEWQLLFEAEFPYNETPDQLTAISEIKQDMM
SPKVMDRLLCGDVGFGKTEVAMRAAFKAVMGKKQVAILSPTTILTEQHFNTFKKRFKNFP
VKIAMISRFIGKSKEREIIKNLETGEIDIIIGTHKILSKKIIYKNLGLIIIDEEQRFGVR
EKERLKEIKVSIDCLSLSATPIPRSLHMSLIKLRDISVLKTPPQNRIKIETYVEEFNELL
IKHAIENELSRDGQVFFVHHNIQELDSIKAILEKVVPYARIATIHAKLTGEQIENIMHDF
INKSYQVLLATTIIENGIDIENANTIIINNANRFGLAQLYQLRGRVGRSSQKAFAYFLYK
ENSSLNEGAIERLKAISELSELGAGFQIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLT
MLNKAIEKRMGKNSKEDKITIEINYNGFIPDSYINSEQDKISIYKKIAAIQNEEENNKIR
SEIYDRFGPIPKELNTLLMLSELKLLVKKLNIASLKERNGLLEIEYLNTSSIPVTKIIQI
IKYNPTIMKINPEYKNSVFLNLKNVKESEKIKCIYKNLNLLL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagaaaaagaaataactgtcagactaagtgaaaatcaaaatttaaaaaaaata
aaacaatttattaaaaataatataccctttgtaataacagggcatgaaggattttttaag
gcttttctaatcaacaaaataaaggaatacagcaaagaaaataaagttatattaatagta
aaaaacgaaaatatttccagtgaactcaaaaatgacttaatgcaaattacagatcaaata
tatgaacttaattattttaattcccttacatataaaggaataagttcaaaaagcaaaatc
tttagcgaaagagtaaaatttttaatcaatttttatgaaaataattctggaatctacatt
gtttcgcttaaatctctacttagcaaaattcctacaaaagaaaatttatttaacaacatt
tataaaattcatacaggtaagatcataaacatagaaaatcttgaaattaatcttataaaa
ttaggatatgaaaaaacaactagggttgcattacctggcgaatttacaataaagggtaca
acaatagacctatatccatttaacaaagcacaaccaataagaatctcgatgcatgtcgat
aaaatagaagaaatcaaatattttaatcccttaactcaattaaaacaagaaaatgaaatt
ttagaatttgatataattcctacaaaagaaatcatttggaataacgaaagcataaacata
ctaaaacaacacataaaagaaaatgaatacaaaaaattatttgaacaaattcaaacaaaa
tataatgtaagagcagaagaaatgttctatccattaataggcaatacatacttaagtcaa
gaaataaatgcagacataattactataaatttcgaaataccaaatttacaagcagagata
aaaaatatctataaagaatatgaaaaactctataatcaagcaatagagacaggagaaaaa
acaattgccccaaaaaaaattttcacgaacctaaacaatctaagattaaaaactcacatc
ttattcgccaaaacccctgcccctacaaaaacagaagaaatcatagaatttaaaatagaa
agtgaatgtaaatgtttttcaaacattgcacttgcaaaggagaaaatacaaaattggcta
aataatggatttaaagtaataattgcagcagaatctaactcacaaaaagaaaaattaaaa
tacatattcaaagagctacatcaaatcaaaattgaagtattaaaaatatcaagctcactt
ataataaacaaagaaaaaatagcaattattcttgaatcagatatcttcaatagaatacaa
aaaacaaataaagctttcgaatcatcaaaaacaaaaaccattgattcattcattgaaatt
gaaaaaaatagtcatattgttcacataaaccatggaattggaatatttagaaagataaaa
agaattaaaacaagtcttcttgaaaaagactacattgaaattgaatatgcagacaacgaa
aaattatttattccaattgagcaaacacacctcattcaaagatatatcggcaatgaaact
caaaacataaaattagataaaatcagctcaaaaacctgggaaaagaaaaaagcttatgca
aagaaaagaattgatgcaattgctgataagcttgtctcactttacttagaaagagaaagc
actaagggatttcaatatcctcaagatgatgaatggcaattattatttgaagcagaattt
ccatacaatgaaactccagaccaattaacagcaatatcagaaatcaaacaagatatgatg
agtccaaaagtaatggatagactcctatgcggagacgttggatttggtaaaactgaagtt
gcaatgagagctgcattcaaagctgtcatgggtaaaaaacaggtagcaatactctctcca
acaacaattcttacagaacaacacttcaatacattcaagaaaagatttaaaaactttcca
gtcaaaattgcaatgattagcagattcataggaaaatcaaaagaaagagaaattattaaa
aatttagaaacaggcgaaattgacataataattggaacacacaaaatactctctaagaaa
ataatatacaagaacttaggactcatcataattgatgaagaacaaagatttggagtaaga
gaaaaagaaagacttaaagaaataaaagtctctattgactgtctttccttatcagcaact
ccaattcctagatctcttcatatgtcattaatcaaattaagagacatctctgtcctaaaa
actccaccccaaaacagaattaaaatagaaacttacgtagaagaatttaacgaactactg
attaaacatgcaatagaaaatgagctttccagagatggacaagtcttctttgtacatcac
aatattcaagaattagattcaataaaagcaatactagagaaagtggtcccttatgcaaga
attgcaactatccacgcaaagctcacaggtgaacaaattgaaaatattatgcatgatttt
ataaataaatcataccaggtactactagcaacaacaataattgaaaacggaatagatatt
gaaaacgcaaatacaataataattaacaatgcaaacagatttggacttgcacaactatac
cagctcagaggaagagtcggcagaagttcacagaaagcctttgcctattttttatacaaa
gaaaactcaagcctaaatgaaggtgctattgaaagactaaaagcaatatctgagctttca
gaacttggagcaggatttcaaattgcaatgaaagatatggaaataaggggtgttggaaac
ctacttggaagagaacaacatggagagatagaatctattggattggattactatctaaca
atgttaaacaaagcaattgaaaaacgaatgggtaaaaattctaaggaagataaaatcact
attgaaatcaactataacggatttatacccgacagttatataaatagtgaacaagacaaa
atatcaatttataaaaaaattgcagcaattcaaaatgaagaagaaaataataaaataaga
tctgaaatctatgatcgatttggaccaatcccaaaagagcttaacactctacttatgtta
tcagaattaaaattacttgttaaaaaacttaatattgctagtcttaaagaaagaaatgga
ttactcgaaatcgaatatttaaacacaagcagcattcctgtcacaaaaataatacaaata
ataaaatacaatcctactataatgaaaataaacccagaatataaaaattcagtttttcta
aacttaaaaaatgtgaaagaatcagagaaaatcaaatgtatatataaaaatttgaatcta
ttattataa
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