Bifidobacterium angulatum: BBAG_1235
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Entry
BBAG_1235 CDS
T03930
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bang
Bifidobacterium angulatum
Pathway
bang03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bang00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBAG_1235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bang03021
]
BBAG_1235
03400 DNA repair and recombination proteins [BR:
bang03400
]
BBAG_1235
Enzymes [BR:
bang01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBAG_1235
Transcription machinery [BR:
bang03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBAG_1235
DNA repair and recombination proteins [BR:
bang03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBAG_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Focal_AT
STAT_alpha
Motif
Other DBs
NCBI-ProteinID:
BAQ96857
UniProt:
C4FGE4
LinkDB
All DBs
Position
complement(1573797..1577843)
Genome browser
AA seq
1348 aa
AA seq
DB search
MLDVNAFDKLKIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYMLNV
TPKDLEKVIYFASYMVTDVNEEQRHQDLPDLQDEFDHEIANLEKRRNNDIEDRAKKVESD
LAELEAIGEAKGPARTKLRNSAERDMAAIRQRYDEQIARLNAVFDKFKKLKPGDIVDDVD
LWREMQDRYEDYFDGCMGAEAVKKRLQSLDLEAIAAQLREEIKDASEQKKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPELRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRG
DSAVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVMEGAKGQG
RVFSSLAEAEMALDLHEIDMQAEVLIRMPADFVLPEGWEPREIKVVDKDGHDDLETVKEE
RFHDGTTLFATSYGRVLFNETLPVDYPFVNVPVGKKQLSKIVDDIATRYSTAQVAASLDA
LKDMGFTRAPWSGVSFAFSDVIEPPEREEFIARYEDEAAQVNENFEMGLMTEEERRNELI
KLWTECTAEVSKAVEKHFDAKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRP
VKSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKA
GIDVQVAERNANGELVLVKNADGGPYSRLLAADVIDPADGKTVLYKRNDALSMDVLDDLV
AHGVEYVKCRSVLSCESKRGVCAKCYGWSMATNKLVDVGETVGIVAAQSIGEPGTQLTLR
SFHSGGVASASDITQGLPRVTELFEARTPKGESPITEFAGTIKITDTDRGRQIILTPDSD
SGAPTEDGAIKPIVYSVSRRVKALVQDGEHVETGTQLIEGSVDPKKILRIIGKRAAQMNI
VEEVHNVYRSQGVDIHDKHIEVIVHQMSRRITVVDSGETDLLPGELVDQQRFREVNKAAV
KAGKKPASGRPELMGITKASLATDSWLSAASFQETTRVLTDAALNEKVDDLKGLKENVII
GKLIPAGTGLARYRNATVEPDKAIRDTIYPNFGLGGDMGEGVDFGDGDMADVDFSHIDFG
DLKLGEDFNPDDFLNDEGGTADFGGETV
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
gtgctggatgtcaacgcatttgacaagctgaagatcggcctggccaccgcagacgatatt
cgcggctggagccacggcgaggtcaagaagccagaaaccatcaactaccgtaccctcaag
cccgagaaggacggtctgttcggcgaacagatcttcggtcctacccgcgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgcgaacgatgcggcgtc
gaagtcaccaagagccgtgtgcgccgtgagcgcatgggccatatcgagcttgccgccccg
gtgacccacatctggttcttcaagggtgtgccgtcccgcttgggctacatgctcaacgtg
accccgaaggatctggagaaggtcatctacttcgcctcctacatggtcaccgacgtgaac
gaggagcagcgccatcaggatctgcccgacctgcaggacgagttcgatcacgaaatcgcc
aacctcgagaagcgccgcaacaacgacatcgaggatcgtgccaagaaggtcgaatccgac
ctggccgaactcgaagccatcggcgaagccaagggcccggcaaggaccaagctgcgcaac
tccgccgaacgtgatatggcggccatccgccagcgctacgacgagcagatcgcccgtctg
aacgccgtgttcgacaagttcaagaagctcaagcccggcgacatcgtcgacgacgtggat
ctgtggcgcgaaatgcaggaccgctacgaggactacttcgacggttgcatgggtgcggaa
gccgtgaagaagcgtctgcagtccctcgacctcgaagccatcgcggcccagctgcgtgag
gaaatcaaggacgcctccgagcagaagaagaccaaggcgctcaagcgtctcaaggtcgtc
aatgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggatctgcgcccgatggtccagctcgacggcggccgtttcgccacctccgat
ctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtctgaagcgactcatcgag
ctcggcgccccggagatcatgctcaacaacgagaagcgcatgctgcaggaagccgtcgac
tccctgttcgacaacggccgccgcggccgtccggtcaccggcgcctccaaccgcccgctg
aagtccctgagcgacatgctcaagggtaagcagggccgcttccgtcagaacctgctgggt
aagcgcgtggactactccggccgttccgtgatcgtggtcggcccggagctgcgcatgcac
cagtgcggcctgcccaagccgatggccctggagctgttcaagccgttcgtgatcaagcgc
ctggtggatcagggcttcgcccagaacatgaagagcgccaagcgcctggtggatcgtggc
gactccgccgtgtggggcgtgctcgaggaggtcatctccgagcatcccgtgctgctgaac
cgtgctcctacgctgcaccgtctgggcatccaggccttcgagccgatcctggtcgaaggc
aaggccatccacctgccgccgctggcctgcgccgccttcaacgccgacttcgacggcgat
cagatggcagtccacctgccgctgagcgccgaagcccaggctgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggcagacggccacaccgtgaccatgccgtcccag
gatatgatcctcggcctgtactacctgtccaccgtgatggaaggcgccaagggccagggc
cgcgtgttctcctcgctcgccgaggccgaaatggccctcgacctgcacgagatcgacatg
caggccgaagtgctcatccgcatgcccgccgacttcgtactgccggaaggctgggagccg
cgtgagatcaaggtcgtcgacaaggacggccacgacgatctcgaaaccgtcaaggaagag
cgtttccacgacggcaccacgctgttcgccacctcctacggccgtgtgctgttcaacgag
accctgcctgtcgactacccgttcgtgaacgtgccggtcggcaagaagcagctgtccaag
atcgtcgacgacatcgcgacccgctactccaccgcccaggtggcagcctccctggatgcc
ctgaaggatatgggcttcacccgcgcaccgtggtccggtgtctccttcgccttctccgac
gttatcgaaccgccggagcgcgaagagttcatcgccaggtacgaggacgaggcggcacag
gtcaacgagaacttcgaaatgggtctgatgaccgaggaggagcgccgcaacgagctcatc
aagctctggaccgagtgcaccgccgaagtctccaaggccgtcgagaagcacttcgatgcc
aagaacaacctcgccatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaac
cagatcgcaggtatgcgaggcctcgtggcgaacccgaagggcgagatcattcctcgaccg
gtgaagtccaactaccgtgacggcctgtccgtgctggagtacttcatctcccagcacggt
gcacgtaagggtctggccgataccgcactgcgtaccgcagaatccggttacctgacccgt
cgtctggtggatgtctcccaggacgtgatcgtgcgcgaagaggactgcggcaccaaggcc
ggcatcgacgtgcaggtcgccgagcgcaacgccaacggcgaactcgtgctcgtcaagaac
gccgacggtggcccgtactcccgtctgctcgcagccgacgtcatcgacccggccgacggc
aagaccgtgctgtacaagcgcaacgacgccctgtccatggacgtgctcgacgacctcgtg
gcccacggcgtggaatacgtcaagtgccgttccgtgctgtcctgcgaatccaagcgtggc
gtgtgcgccaagtgctatggctggtctatggccaccaacaagctcgtcgacgtcggcgag
accgttggtatcgtggccgcacagtccatcggcgagcctggtacccagctgacgctgcgt
tccttccactccggtggcgtcgcctctgcttccgatatcacccagggtcttccgcgtgtc
accgagcttttcgaagcccgtacgccgaagggcgagtccccgatcaccgaattcgcgggc
acgatcaagatcacggacactgaccgtggtcgtcagatcatcctgaccccggattccgat
tccggtgccccgaccgaagacggtgcgatcaagccgatcgtctactccgtctcccgccgc
gtcaaggcgctggtgcaggacggcgagcatgtcgagaccggcacccagctgatcgagggc
tccgtcgacccgaagaagatcctgcgcatcatcggcaagcgcgccgcacagatgaacatc
gtggaggaagtgcacaacgtgtaccgctcccagggcgtggatatccacgacaagcatatc
gaggtcatcgtgcaccagatgagccgccgcatcaccgtggtcgactctggcgaaaccgat
ctgctgccgggcgagctcgtcgaccagcagcgcttccgcgaggtcaacaaggccgccgtg
aaggcaggcaagaagccggcttccggtcgtccggagctcatgggcatcaccaaggcttcg
ctggccaccgattcgtggctgtccgccgcctccttccaggagaccacccgcgtgctcacc
gacgccgccttgaatgagaaggtcgatgacctcaagggcctcaaggagaacgtcatcatc
ggtaagctcatcccggccggcaccggtctggcccgctaccgcaacgccacggtggaacct
gacaaggccatccgcgacaccatctacccgaacttcgggcttggtggcgatatgggcgaa
ggcgtcgacttcggcgacggcgatatggccgatgtggacttctcccacatcgacttcggc
gatctgaagctcggcgaggacttcaacccggatgacttcctcaacgacgaaggcggcacc
gccgacttcggcggagagaccgtctga
DBGET
integrated database retrieval system
