Bifidobacterium animalis subsp. lactis ATCC 27673: BLAC_06140
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Entry
BLAC_06140 CDS
T02862
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
banl
Bifidobacterium animalis subsp. lactis ATCC 27673
Brite
KEGG Orthology (KO) [BR:
banl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
banl03019
]
BLAC_06140
Enzymes [BR:
banl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BLAC_06140
Messenger RNA biogenesis [BR:
banl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BLAC_06140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
HA2_C
ResIII
AAA_11
NACHT
AAA_16
Zeta_toxin
AAA_23
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AGW85407
LinkDB
All DBs
Position
1424195..1428241
Genome browser
AA seq
1348 aa
AA seq
DB search
MKFEYPDQLPVSAAREAIANAVRSSQVVIISGQTGSGKTTQLPKILLELGRGSHGKQIVH
TQPRRLAARTVAERLADEMGVRLGDEIGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LTRYDTIIIDEAHERSLNIDFLLGYLTALLPLRRDLKLIITSATIDSAKFQKHFEDALRT
EVPVIEVSGRTYPVTICYEPLGGTPALMRHVPGFADGTAGDDITNPDAEAMDMPTAVARA
CTELAILSTHDQGPRDILVFASGERDIRDFEQALRHHFGPRAADMRRPDAIEIVPLFARL
SAKEQHRVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGTARISRYSKQAKVQRLPIEP
ISQASADQRSGRCGRIADGIAIRLYSSEDYESRPRFTEPEILRTSLGAVVLHMLSVGVAR
TAEDITDFGFIDPPDIKAVSDGINELTELRAISRKRGVMQLTHTGRQLARIPIDVRLGRM
VIEAARSTTPNTLAAVLVVVAFLSLQDPRERPEEKREEADCIHNRYADETSDFLTALNIW
DRAYGADGEMSSHALRRLCKTEYLHFLRMRQWRDLVSQLRELCRELKFNVGEPIPVSRPP
REIRELPINQQAAHSLACSWDSQGIHTSMLAGLLSMMGMQVVHEPKASDFTGLKGAARAR
AMKRAQKMAKNDYLGARGTHFAIFPASALSKSTPSWVMSTELVQTSRLWARYCAAIDPAW
AEPLAGNLTRTTYANPHWSASRGSAVAESNVLLYGLPIVQGRTVQWGRINPLEARDFLIR
QGLVEGEIQQRFAHDEFIDANRSVIEEAQEESNRTRQVAQTVSDEDLYDFYNEVIPNTVT
CVADLAKWWKGEFEAHPHLLDFDPSKVERLLDQESVSMEDFPDHWVAVGSDERVIELRLS
YVYDTHDPADGVTVHIPLGVLSRISAPQFSWNVPGLRHELIVAMIKALPKALRVQFVPAP
DTATKIEDWIDSHFQTDPGSGTLDSPAQVDGGVWPDFAHVFTQAAIEVVGAQIHPEVLDG
LADKLPPYLRMNFVIEQPKPRPKRAHRRRSYDDGVVVLGTGKSLVELQRQFAEQAQESAR
KIVHRQAQKAAEQGQVVAEADLLRKAGATTEAREEMLWRGALDRLRLPAERISSRWLGAE
ALMLASAPYSTTKALADNLQLQTVKRLLPDIAKLSSDEALSEAVDGVKEVFEDAVYEVAK
DAIEVLRAYAQVDKAVSGKADLPMLSVLQSVREHIATLVHPGFIGATPPDSFRRLPVYLQ
ADMIRLSKAKTDKNRDVRWAWQADEAKQIVDKALEKARKEPAGAKHDELMAKALKAPGIV
EEFYVSLWAQELGTPYPVSVQRIQKALR
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaataccccgatcagctgcctgtctcggccgcacgcgaagccatcgccaac
gcggtgcgttccagtcaggtggtgatcatctccgggcaaaccggttccggcaagaccacg
cagctgccgaagatcctgctcgaactcggtcgtggctcgcatggcaagcagattgtgcac
acgcagccacgccgtctcgccgcgcgcaccgtggccgaacgcctcgccgacgagatgggc
gtgcgcctgggcgacgaaattggctaccaggtgcggttcaccgacgaaagctcgccgaag
acacgcctgcgcgtggtcaccgacggcattctgctcgcgcagatccaacgcgatccgaaa
ctgacacgctatgacacgatcatcatcgacgaggcgcacgaacgcagtctcaacatagac
ttcctactcggctatctcaccgccctgctgccgttgcgtcgcgacctgaagctcatcatc
acctccgcgacaatcgattcggcgaagttccagaagcatttcgaagacgcactgcgcacc
gaggtaccggtaatcgaggtctccggccgcacgtacccggtcacgatctgctatgagccg
ctgggaggcactcccgcgctgatgaggcatgttcccgggtttgcggacggaacggccggc
gacgacatcacgaacccggacgccgaggcaatggacatgcccaccgcggtcgctcgcgca
tgcaccgaattggcgattctctccacgcatgaccaaggaccacgtgacattctcgtgttc
gcctccggcgagcgcgacatccgcgacttcgagcaggcgctccgccatcatttcggcccg
cgtgccgccgacatgcgcaggccggacgccatcgagatcgtgccgttgttcgcacgtctg
agcgccaaggaacagcatcgcgtgttcgaaccgcatacgcaccagcgcatcgtcatcgcc
acgaacgtggccgagacatcgctcacggtgccgggcatacgctatgtggtggatccgggt
accgcgcgtatctcgcgctattcgaagcaggcgaaagtgcagcggctgcccatcgagccg
atctcgcaggcgagtgccgaccagcgttcgggtcgctgcggccgtatcgccgacggcatt
gcgatccgcctgtattcgagtgaggattacgagtcacgcccgcgtttcaccgagccggag
attctacgcacgtcgctcggcgcggtcgtgctgcacatgctctcggtgggcgtggcgagg
acggcggaggacatcaccgatttcggattcatcgacccgcctgacatcaaggcggtctcc
gacggcatcaacgaactcaccgaattgcgtgcgatttctcgcaaacgcggcgtcatgcaa
ctgacgcacaccgggcgccagcttgcgcgcataccgattgacgtgcgtctgggccgcatg
gtgatcgaggccgcccgctccaccacgccgaacaccttggccgcagtgctcgtcgtcgtg
gcgttcctgagcctgcaggatccgcgtgaacgccccgaggagaagcgcgaggaggcggat
tgcatccacaaccgctacgccgacgagaccagtgattttctcaccgcactgaacatatgg
gaccgcgcatatggggcggatggcgagatgagcagccatgcactgcgcaggctgtgcaag
actgaatacctgcatttcctgcgtatgcgccagtggagggatctcgtctcgcagctgcgc
gaactgtgccgcgaactcaagttcaatgtgggcgaaccgattccggtgtcgcgaccgccg
cgtgagatccgggaactgccgatcaaccagcaggctgcgcattcgctcgcctgttcatgg
gacagccaaggcattcacacctccatgttggccggtctcctctcgatgatgggcatgcag
gtcgtgcatgagccgaaggcgtctgatttcaccggtctcaagggtgccgcccgagcgcgg
gcgatgaaacgtgcacagaagatggcgaagaacgattacttgggtgcgcgaggcacgcat
ttcgcgattttcccggcgtcggcactctcgaaatccacgccgagctgggtgatgagcacc
gaactcgtgcagacgagccggttgtgggcgcgctactgcgctgcaatcgaccctgcgtgg
gcggagccgctcgccggcaatctgacccgcaccacgtatgcgaacccgcactggtccgcc
tcacgtggctccgcagtggcggaatcgaatgtgctgctgtatgggctgcccatcgtgcag
gggcgcaccgtgcagtgggggcgcatcaacccgctcgaggctcgtgatttcctgattcgt
cagggacttgtggaaggtgagattcagcagcggttcgcgcacgacgagttcatcgacgcc
aaccggtcggttatcgaggaggcccaggaggagtcgaatcgcacacgtcaggtggcgcag
acggtgagcgacgaggatctgtacgatttctacaacgaggtgattccgaacacggtgacc
tgcgtggctgacctggcgaaatggtggaagggcgagtttgaggctcacccgcatctgctt
gatttcgatccgtccaaggtggagcggctcctcgaccaggaatcggtgagcatggaggac
ttccccgaccactgggtcgccgtcggttccgacgagcgtgtgattgagctgcggctgagc
tacgtttacgacacgcacgatcctgcggacggcgtcaccgtgcacattccgctcggcgtg
ctctcacgcatctcggcaccgcagttcagctggaatgtgcccgggctgcgtcatgagctc
attgtggcgatgatcaaggcattgccgaaggcgctgcgcgtgcagttcgtgccggcgcca
gacaccgcgacgaagatcgaggactggatcgactcccatttccaaaccgacccgggttcc
ggcacactggattcccctgcacaggttgacgggggcgtgtggccggatttcgcgcacgtg
ttcacacaggccgccatcgaggtggtcggggcgcagattcacccggaggtgctcgatggc
ctcgccgacaagctgccgccatacctgcgcatgaatttcgtgatcgagcagccgaagccc
cggccgaagcgtgcccaccgccgccgttcgtacgacgatggcgtggtggtgctcggcaca
ggcaagtcgctggtcgagctacagcgccagtttgccgaacaggcgcaggaatccgcacgc
aaaatcgtgcaccggcaggcccagaaggccgccgagcagggtcaggtggtggccgaggcg
gatctgctgcgcaaagccggtgccaccacggaggcgcgcgaggagatgctctggcgaggg
gcgctcgatcggctgcgcctgcctgccgaacgcatctcgtcacgctggctcggtgccgag
gccctcatgctcgcatcggctccgtattcgaccacgaaggcgctcgccgacaacctgcag
ttgcagacggtgaagcgattgctgccagacattgcgaaactgagctccgacgaggcgttg
agtgaggccgtggatggcgtcaaagaagtgttcgaggacgccgtgtatgaggtggccaag
gacgcgatcgaggtgctgcgggcctatgcgcaggtagacaaggcggtcagcggcaaggcc
gacctgcccatgctctcggtgctgcagtcggtgcgcgaacatatcgccacactcgtgcat
cccggtttcatcggcgccacgccgcccgattcattccgcagactgccggtctacctgcag
gccgacatgatcagactctccaaggcgaaaaccgacaagaaccgcgatgtgcgctgggcg
tggcaggccgacgaagccaaacaaatcgtcgacaaagcgctcgaaaaggcacgcaaggag
ccggccggggccaagcacgacgagctcatggccaaggcgctcaaggcaccggggatagtc
gaggagttctacgtgtcgctctgggcgcaagagctcggcactccttacccggtaagtgtg
cagcgcatccagaaggcactgcgttag
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