Burkholderia anthina: JFN94_05380
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Entry
JFN94_05380 CDS
T07672
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bann
Burkholderia anthina
Pathway
bann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JFN94_05380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bann03019
]
JFN94_05380
03009 Ribosome biogenesis [BR:
bann03009
]
JFN94_05380
Enzymes [BR:
bann01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JFN94_05380
Messenger RNA biogenesis [BR:
bann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JFN94_05380
Ribosome biogenesis [BR:
bann03009
]
Prokaryotic type
rRNA processing factors
JFN94_05380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QQK03599
UniProt:
A0A7T6VGT1
LinkDB
All DBs
Position
1:complement(1142503..1145664)
Genome browser
AA seq
1053 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPER
PAPSPAPQRPAEPVAAPAPVAAASGGFIGWLKGLFGMSPAPAPAPVAPAPVKEQAARPAR
ERTEKSDQRGGDRNRNRRGGTQQAQGGRDQAAAGRGQPQRLEREGKEVREPREPREGREG
REPRDAREPRENREGREGRGPREGREPREPRENREPREPRENRENREPRERAEQPEAADA
AGRGERQERGERRERGERRKPTQHAATLETVTRGENHPESEADEAAATALPGADVAADAE
AGARDGEERRRRRRGRRGGRREREDEGAVVDQGMHGEAAEQVVTTEASPAIEPTHTAAPV
AVAAVAAAGAAVADAAVEQRAEPAAVEPQPAPVRVEATPVAPVEPAVVALAAEPAPVAPA
AAEEAGPAPVAVSPTDAFEVPAAPTAVEAQQPAPVEQPAPAPVVAAEVAPVTVAPVTVEP
VRVEAAPVEAAPAEAVAAPAPAPSQPAAAPASASLDVVLEQAGLVWVNTDADKFRAAQEA
ASRLPRAARVPRERKTLPPVDSTPMQQVETSHR
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgaaacagccgggcgcgaacagcgcaaaggcaat
atctacaagggtgtcgtgacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcattcaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgaaaaggaagaacgcggcaacaagggcgccgcccttacgacgttcatctcg
ctcgccggccgttatctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaaccatggcgcagctgcagattccc
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcaactgtggcgcgcgatcgaagcagcgtcgcaaagcggg
aattccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctcttctcgcgcttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtaccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgtgcgaccaagggtgcggacatcgaggaaacggcaacc
cgcacgaacctcgaagcggcggacgaagtggcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
caacgcctgaaggacgcgctcaagcacgaccgcgcccgcgtgcagatgggcaagatctcg
cgcttcggcctgatggaactgtcgcgccagcggctgcgcccggccctgtcggaaggcagc
cacgtgacgtgcccgcgctgtaacggcaccggccacatccgcgacaccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaggcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagcttgagcgcctgcgccatgacgacgcacgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagccgcccgcgaactggagtcggaaaccggctacagcaag
cgcgcagccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgagcgg
ccggctccgagcccggcaccccagcgcccggccgagccggttgctgcaccggcaccggtc
gccgcggcaagcggcggcttcatcggctggctgaagggtctgttcggcatgtcgccggct
ccggcacccgcgccggttgcaccggcaccggtgaaggaacaggctgcccgtccggcccgc
gagcggaccgagaaatcggaccagcgcggcggcgatcgcaaccgcaatcgtcgtggcggc
acccagcaggctcagggtggtcgcgaccaggctgcggcaggccgcggccagccgcaacgc
ctggaacgcgaaggcaaggaagtgcgcgagccgcgtgaaccgcgtgaaggccgtgagggt
cgtgagccgcgcgacgctcgcgaaccgcgtgaaaaccgcgaaggtcgtgagggccgtggc
ccgcgtgaaggtcgcgaaccgcgcgagccgcgtgaaaaccgcgaacctcgcgagccgcgc
gagaaccgcgagaaccgcgagccgcgcgaacgcgccgagcagccggaagccgccgacgca
gccggccgtggcgagcgccaggaacgtggcgagcgtcgcgaacgcggcgaacgccgcaag
ccgacgcagcatgcggccacgctcgaaaccgtcacccgtggcgagaaccatccggagtcg
gaagccgacgaagcagccgcaaccgccctgccgggcgccgatgtggctgccgatgcggaa
gctggcgcacgtgacggcgaggaacgtcgccgccgccgccgcggccgccgtggcggtcgc
cgcgaacgcgaggacgaaggcgcagtcgtcgaccagggcatgcacggcgaagccgccgag
caggtcgtgacaacggaagcgtcgcctgcgatcgagccgacccatacggccgcaccggtt
gccgtggcagccgttgccgcagcaggcgccgccgttgccgacgcagccgtcgagcagcgt
gccgaaccggccgcggtcgagccgcaaccggcaccggttcgcgtcgaagcgacgccggtt
gctccggtcgagcccgccgtggtcgccctggccgccgaaccggcaccggtcgcaccggct
gccgccgaggaagccggcccggctccggtcgcggtttcgcctaccgatgcgttcgaagtg
ccggccgcaccgactgccgtcgaagcgcagcagcccgcgcccgtcgagcagcccgcaccg
gcaccggtcgttgcagccgaagtcgctccggtaactgtcgctccggtaactgtcgaaccg
gttcgtgtcgaagccgcaccggtcgaagccgcaccggccgaagcggttgcggcaccggca
ccggctccctcgcaaccggccgcagcgcccgcttcggcgagcctcgatgtcgtgctggaa
caagccggcctcgtgtgggtgaacacggacgccgacaagttccgcgcggcgcaggaagcc
gcctcgcgcctgccgcgtgcagcccgcgtgccgcgcgagcgcaagacactgccgccggtc
gactcgaccccgatgcagcaggtcgaaacgtcgcaccgctaa
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