Burkholderia anthina: JFN94_07875
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Entry
JFN94_07875 CDS
T07672
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bann
Burkholderia anthina
Pathway
bann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JFN94_07875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bann03019
]
JFN94_07875 (rnr)
03016 Transfer RNA biogenesis [BR:
bann03016
]
JFN94_07875 (rnr)
Enzymes [BR:
bann01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JFN94_07875 (rnr)
Messenger RNA biogenesis [BR:
bann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JFN94_07875 (rnr)
Transfer RNA biogenesis [BR:
bann03016
]
Prokaryotic type
tRNA degradation factors
JFN94_07875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
QQK04058
UniProt:
A0A7T6VHJ1
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All DBs
Position
1:1674315..1676777
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AA seq
820 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHGDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFNQPALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGFRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKALFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGRKYTPKAPDGFELNTALSPR
ARAMQQADDESHGRSRLNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPAPAPAPAATGNDRGGPRVRSLPPAEDAVPRRK
KAASAPTVAVKEARAARAAKKKGGTAAKTAAKKPHPRKKY
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgatatcgccgaagcgctgtcgatcaagcgtcaggag
cgcgaggggttcttccggcgtgtcgccgcgatggaacgcgacggccagattcgcctcgac
aagcgcggtcactaccagctcacccatccgtcgaacttcgttgccggtcgcgtgcagggg
catcgcgacggctacgggttcgtgatccgcgacgacggtcaggacgatctgtttttgccg
aacggtgaaatgcagaaggtcatgcatggcgatcgcgtgcttgcgcggatcgtcggctac
gatcgccgcggccgtcccgaagggcacgtcgtcgaagtcaccgagcgagcgaacaagcgc
gtgatcggtcgcctgctcaatgaaaacggcgcgctgatcgtcgcccccgaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgagttgaccgattttccgagccgtcattcgcaaccgctcggccgcgtcgtcgag
gtactcggcgacatcgacgatccgggcatggaaatcgagatcgcggtgcgcaagtacggc
gtgccgcacgaattcaatcagccggcgctcgacgaagccgccgcgctgccggacaaggta
cgcccggccgatctgcgcttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgat
ggcgaggatgctcgcgacttcgatgacgccgtctactgcgagcccgtcaaggtcggccgt
ggcgacggttttcgcctgatcgtcgcgatcgccgacgtttcgcactacgtgcaaccgggc
agcggcctcgacgccgacgcgctcgaacgcagcacgtcggtctatttcccgcgccgcgtg
atcccgatgctgccggagaaattgtcgaacggcctctgttcgctgaatcctcaggtcgac
cgctgcgtgctcgcgtgcgacatggtgattaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggcggtgatccactcggccgcgcgtctgacgtacactgaagtcgcggccgtg
ctgtcgaacacgaaggggccggaggccgcgcgtcgcgcggacctgctgccgcacctgcag
gacctgtacggcgtctacaaggcgctgttcgccgcgcggcagaaacgcggcgcgatcgac
ttcgacacaaccgagacgtacatcgtctgcaactcgcagggcaagatcgagcagatcgtc
ccgcgtcaacgcaacgatgcacacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgtgcggccgactttctgaagcgcaacaagcatccggggctgtaccgcgtgcatgcgggg
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcggcatgggtctgtcgctc
ggcggcggcgacaagccgcatgcgagcgattacgcggcgctgatggcgcagatccgcgac
cggcccgatgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtctac
agcccggacaacatcggccacttcggtctcgcctacgaggcgtacgcccacttcacgagc
ccgatccgccgttatcccgacctgctcacgcatcgcgcgatctacgcgatcctgtcgggc
aggaaatacacgccgaaggcgccggacggcttcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgaatcgcacggccgctcgcgcttgaacacggcg
atctgggaagagctcggcctgcattgctcggcgaacgagcgacgtgccgatgaagcgtcg
cgcgacgtcgaagcgtggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctcttc
attgaaggcctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaacgagctgcgcggcgagcgtacgggcatccgttatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgacctcgacgcgcgcaagatcgacttccgcctcgtgcgcgac
acgccggtgaaggcaccgcgcccggcaccggcaccggcgccggctgctaccggcaacgat
cgtggcggtccgcgcgtgcgctcgttgccgccggcggaggatgccgtgccgcgccgcaag
aaggcggctagcgcgccgaccgtcgcggtgaaggaagcgcgtgctgcgcgtgcagcgaag
aagaagggcggtaccgcggcgaagacggcagcgaagaagccgcacccgcgcaagaagtat
tga
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