Burkholderia anthina: JFN94_09835
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Entry
JFN94_09835 CDS
T07672
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bann
Burkholderia anthina
Pathway
bann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JFN94_09835 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bann03400
]
JFN94_09835 (mfd)
Enzymes [BR:
bann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JFN94_09835 (mfd)
DNA repair and recombination proteins [BR:
bann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JFN94_09835 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
Glyco_tran_WecG
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QQK01414
UniProt:
A0A7T6VCH8
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All DBs
Position
1:2094924..2098394
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AA seq
1156 aa
AA seq
DB search
MPDNASTPFASPVARVKPGQRFAFDGAHGSADALAIARYLADNRDAVPLLAVICANAVDA
QRLSQELRYFAPAARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGSGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLETSI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPSSNDDFASWL
ASDARFALGIAPLASGFAVPGEGYALVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGNSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIAIAHGQMHERELERVMRDFVAQRTNVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CVDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRPGATSAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaccccgttcgcctcgcccgtcgcccgcgtcaaaccgggccag
cggttcgccttcgacggcgcgcacggctctgccgacgcactcgccatcgcccgctatctc
gccgacaaccgcgacgcggtcccgctccttgcggtgatctgcgcgaacgcggtggacgcg
cagcggctgtcgcaggaactccgctacttcgctccggccgcgcgcgtgcgcctgctgccg
gactgggagacgctgccgtacgacaccttctcgccgcaccaggatctcgtctccgagcga
ctggcgacgctgcacgacctcggcgaggggcgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcctacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctgacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgttgccgtaccggatcgacctgttcgacgatcaggtcgactcg
atccgcgcgttcgatcccgatacgcagcgcagcctctacccggtgcgcgacgtgcgcctg
ctgcccggccgcgaatttccgttcgacgaagcagcgcgcacggcctttcgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggatatcggcagcggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaacggccacgctg
ttccactacctgccgcaggacgcgcatctggtgttcgccggcgatctcgaaacgtcgatc
cgccgcttcaccgccgacacgaagcagcgccacgcattcctggcgcacgatcgcgagcgg
ccgattctcgagccgcagcgcctgttcctgtcggacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgaccgcgctgccc
gagctcacggtcgatcgccacgccgacgatccgctcgccgcgctgcgcacgttcgtcgaa
tcgtccggcaagcgcgtgctgctgaccgtcgaatcggccggccgccgcgaaacgatcctg
caactgcttgccgaacatcacctgcggccgtcgtcgaacgacgacttcgcgagctggctc
gcgagcgacgcgcgcttcgcgctcggcatcgcgccgctcgcgagcggcttcgcggtgccg
ggcgaaggctatgcgctcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
gggcgccgccggcaggagcaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtggtccacgcgcagcacgggatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcacctcgaatacgcgggcaac
agcaagctctacgtaccggtcgcgcaactgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctcgggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gctcgcgaaggccatgcgttcgcgctcgagccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggaaacacccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaa
gtcgcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtca
ccgaccacgctgctcgcggagcagcacacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgtttcaagaccacgaaggaagtcaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgtttcggcgta
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgcacgctcgggatggcgctcgaggggctgcgcgacttctcggtgatc
gccactgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgaactgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaatcgcaaggcgatgctcgaggaactggtgcccgaagca
cgcatcgcgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcaccaacgtgctgctgtgcaccaccatcatcgagaccggtatcgac
gtgccgagcgcaaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctc
caccagttgcgcggccgcgtcggccgttcgcaccaccaggcctatgcgtatctgctggtc
cacgatccgcaggcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctttacacc
gacatgctcaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgtggacgtgcaggagcggctgtcgctgtacaagcgtctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgaaacgcaccggctgcggctggccgcgaagccgctcggcatcgtc
aagatcgacgcaagcgaggtcgcgatcgggctgcagttcgaaccgaacccgccgatcgat
ccgatgcggatcatcgagatggtgcagaaacaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgttgcgcgcgctcgcgccgcgtccgggcgcgaccagcgcggcgcgctga
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integrated database retrieval system
