Bicyclus anynana (squinting bush brown): 112048288
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Entry
112048288 CDS
T07476
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bany
Bicyclus anynana (squinting bush brown)
Pathway
bany03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bany00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112048288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bany03019
]
112048288
03041 Spliceosome [BR:
bany03041
]
112048288
Messenger RNA biogenesis [BR:
bany03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112048288
Spliceosome [BR:
bany03041
]
Complex B
Other components
Prp19-related factors
112048288
Complex C
112048288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
DHR-2_Lobe_A
Mad3_BUB1_I
NRDE-2
TPR_10
PPR
TRPM_tetra
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
112048288
NCBI-ProteinID:
XP_023941537
UniProt:
A0A6J1N8W9
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Position
3:complement(5200501..5204375)
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AA seq
842 aa
AA seq
DB search
MPTLDGKEIDIFFTEEDLPYEEEILRNPFSVKHWLRYIEHKKSAPKNEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCIIDPAYEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITVTRNAFDSALRALPITQHHRIWPLYLSFLKKHNIPETAVRVFRRYLKLSPEDTEEYI
DYLIVIEKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKVNPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIEDARLIFEKATQ
VSYAKVDDLASVWCEWTEMEIKHENYEKALTLMQRATVLPSRKVAYHDDNETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERATTAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLQDAK
AREMCIRFAEMETRLGEIDRARAIYAHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQNKG
NILFVRGETQGLKEADKVVNPDEIDIDEEESENSGDEDEEVAPVQKKEIPAAVFGGLLSE
KE
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcctactcttgatggaaaagaaatcgatatattttttactgaagaagacttaccatat
gaagaagagatattaagaaatccattttcagtcaaacattggcttagatacatagaacat
aaaaaatctgcacccaaaaatgaaattaatatgatctatgagagagctctcaaagaatta
ccaggttcttttaagctttggtacaattatcttaaattaagaagatcacagattagaggt
cgttgcattatagaccctgcttatgaagatgttaacaattgttttgaaaggtcacttgtt
tttatgcataaaatgcctagaatatggatggattactgtacctttctaacagaccaatgt
aaaataactgttactaggaatgcatttgatagtgctttaagggctttgcctattacacaa
catcatagaatttggccactttatctcagttttctaaagaaacataacatcccagaaaca
gctgtgagagtattcagacgatatctcaagctatctccagaagacacagaagaatatatt
gattatttaatagtaatagaaaaattagatgaagcagcagtgaaactggcacaacttgtt
aacaatgagaactttcagtcaaagcatggaaaatcaaatcaccaactttggaatgaactt
tgtgaattaatatctaaaaatccagacaaaattcattcactaaatgttgatgctataatt
agaggtggacttagacgttatactgatcagttaggacatctgtggaactcattagcagac
tattatgttaggagtggtctgtttgagagagctagagatatctatgaagaagccatacaa
actgtaaccactgttagagactttactcaggtttttgatgcatatgctcaatttgaggaa
ctcagtctaagtaaaaaaatggaggaagttgctaagaaagtaaatcccactgaagatgat
gacattgatttagaacttagattagcaaggtttgaatacttaatggagagaagattgcta
cttctgaattcagtgcttttaaggcaaaacccacataatgtagctgaatggcataaaaga
gttaaactttatgaaggcaaaccccatgaaattattgatacatacacagaggcagtacaa
actgtagatccaaaactagcagtaggaaagctttacaccctttgggtgggttttgccaaa
ttttatgaaagtaatgaccaaattgaagatgcaagattgattttcgagaaagcaacccaa
gttagttatgcaaaagttgatgacctggcttcggtttggtgtgaatggacagaaatggaa
ataaaacatgaaaactatgaaaaagccttaacattgatgcaaagagctacagtactacca
agccgcaaagtagcttatcatgatgacaatgaaactgttcaaatgcgtttgtacaagtcc
ttaaaggtatggtccatgtatgctgatttagaagaaagttttggcacatacaaatcctgt
aaagctgtctatgaccatattattgatttaaaaatagctacaccacaaataataataaat
tatggcttatttttggaagaacacaattattttgaagaagctttcagagcatatgaaaag
ggaatagctcttttcaaatggccaaatgtatatgacatctggaacacatatctgaccaaa
ttcttaaaaagatatggggggtcaaaactagaaagggctagagatctgtttgaacaatgt
ttagaacactgtccaccagagtttgctaagtcaattttcttactatatgctaaattagaa
gaggaacatggtttagccagacatgccatgtctgtgtatgagcgagccacaacagcggtt
ctaccagaacagatgtttgagatgtttaatatttacattaaaaaagctgctgagatatat
ggagtgccaaaaacacgacaaatatatgagaaagcaattgaaactttgcaagacgctaag
gctagagaaatgtgtataagatttgcagaaatggaaacacgtctgggtgagattgacagg
gcacgtgccatatatgcacactgtagtcaaatgtgtgatcctcgtataactgcagaattt
tggaatacttggaaagaatttgaagtcagacacggaaatgaggatacaatgcgtgaaatg
cttagaattaagagaagtgtacaagctacatacaacactcaagtgaacatgatgtcagca
caaatgttaagctcagcggcacaggcagcaggtactgtatcagatcttgctcctggaatg
aaagatggcatgcgaatgttggaggccaaagcagctgaaatggctgttcagaacaaaggt
aacattctatttgttagaggtgaaactcaaggtctcaaagaagctgataaagtagtaaat
cctgatgaaattgatattgacgaagaagaatctgaaaacagtggagatgaagatgaagaa
gtggcacctgtgcagaaaaaagaaattcctgctgctgtttttggaggtttactatctgaa
aaggagtag
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